Gene Information

Name : Tpau_1622 (Tpau_1622)
Accession : YP_003646582.1
Strain : Tsukamurella paurometabola DSM 20162
Genome accession: NC_014158
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1697470 - 1698141 bp
Length : 672 bp
Strand : +
Note : KEGG: rha:RHA1_ro00074 response regulator, two- component system; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver

DNA sequence : 
GTGCCCAGGGTGCTCATCGCCGACGATGATCAGCGTCTCGTACGCGGGCTCAGTGAGGGGCTCGCGTGCGAGGGCTACGC
CGTGGAGACGGTCGGTGACGGTGAGGCCGCACTGATCGCGGCGGACGCCGGGGAGTTCGATGTGATCGTCCTCGATGTCC
AGATGCCCGGCCGCAACGGTTACCAGGTGGTGCGTGAGCTGCGGCGCCGGGAGAATTGGACGCCCGTGCTGATGCTGACC
GCGAAGGACGGCGAGTACGACGTCGCGGACGGGCTCGACGCCGGCGCCGACGACTACCTGACGAAACCCTTCTCGTATGT
GGTCCTGCTTGCGCGACTGCGCACCCTGCTGCGGCACGGGGCGGCGCGGCGGCCGGTGGTGCTGCGCGTGGGCGGTTTGG
AGATCGATGTCGCGGCCCGCAGTGTGACTCGCGATGGCACGCCGATCAGTCTGACCGCCAGAGAGTTCGATGTCATCGCG
ACCCTCGCCCGCGAAGCGGGGCGGCCGGTCGCGAAGTCCGACCTCGCTCGCGCGGTCTGGGACGAAGCGGAAGATGTCGC
AGGAAACCGGATCGAGGTCTACATCAGCGCATTGCGCCGCAAGGTCGACGCTCCTTTCGGTACGGAGTCGATCGAGACGT
TGCGCGGCTACGGCTATCGGATCCGACAGTGA

Protein sequence : 
MPRVLIADDDQRLVRGLSEGLACEGYAVETVGDGEAALIAADAGEFDVIVLDVQMPGRNGYQVVRELRRRENWTPVLMLT
AKDGEYDVADGLDAGADDYLTKPFSYVVLLARLRTLLRHGAARRPVVLRVGGLEIDVAARSVTRDGTPISLTAREFDVIA
TLAREAGRPVAKSDLARAVWDEAEDVAGNRIEVYISALRRKVDAPFGTESIETLRGYGYRIRQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tpau_1622 YP_003646582.1 winged helix family two component transcriptional regulator BAC0197 Protein 4e-26 42
Tpau_1622 YP_003646582.1 winged helix family two component transcriptional regulator BAC0125 Protein 7e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tpau_1622 YP_003646582.1 winged helix family two component transcriptional regulator VFG0596 Protein 2e-23 41