Gene Information

Name : Tpau_1046 (Tpau_1046)
Accession : YP_003646018.1
Strain : Tsukamurella paurometabola DSM 20162
Genome accession: NC_014158
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1072486 - 1073178 bp
Length : 693 bp
Strand : +
Note : KEGG: rop:ROP_63600 OmpR family two- component response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver

DNA sequence : 
ATGACCACACGGGTTCTGCTGGCCGAGGACGACGAGGCGATCGCATCGCCGCTCGCGCGCGCTCTCACTCGCGAGGGATA
CGACGTCACGGTGGCCGCCACCGGCACCGATGCGGTGCGCCGCGCGCTGGACGAGGAGTTCGCGCTGCTCATCCTCGACC
TGGGGCTGCCCGAGCTCGACGGGTTGGAGGTGTGCCGCGAAGTGCGGGCCGCACGGCCCGAGGTGGCGGTGCTCATGCTC
ACCGCGCGCACCGACGAGATGGACTTCGTGGTCGGCCTCGACGCCGGCGCGGACGACTACGTGGGCAAGCCCTTCCGGAT
GTTCGAGTTGATGGCCCGTACCCGGGCGCTGCTGCGGCGCAGCGCGCCCGCCCCGGACACCGGCGATGTGCTCGACGCGG
GCGGAATCCGGCTCGACGCCAAGGCGCGACGGGTCACGGTGGACGGGTCCGATGTGGCCCTGGCCAACAAGGAGTTCGAG
CTGCTGCGCTTCCTCATGGAGCGTGCGGGCCAACTGCTCTCCCGCGAGGACATCCTCGCGGACGTGTGGGGCGACTCCGA
TCTGCGGGGATCGAAGACCCTCGATATGCACATCTCCTGGTTGCGCCGGAAGATCGGCGACGACACCGGGCCGCACGGCC
CGCGGCGCATCGTCACCGTTCGCGGTGTCGGCTTCCGCTTCGACGCGGAGTAG

Protein sequence : 
MTTRVLLAEDDEAIASPLARALTREGYDVTVAATGTDAVRRALDEEFALLILDLGLPELDGLEVCREVRAARPEVAVLML
TARTDEMDFVVGLDAGADDYVGKPFRMFELMARTRALLRRSAPAPDTGDVLDAGGIRLDAKARRVTVDGSDVALANKEFE
LLRFLMERAGQLLSREDILADVWGDSDLRGSKTLDMHISWLRRKIGDDTGPHGPRRIVTVRGVGFRFDAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tpau_1046 YP_003646018.1 winged helix family two component transcriptional regulator BAC0083 Protein 1e-26 41
Tpau_1046 YP_003646018.1 winged helix family two component transcriptional regulator NC_003923.1003749.p0 Protein 2e-32 41
Tpau_1046 YP_003646018.1 winged helix family two component transcriptional regulator BAC0638 Protein 2e-19 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tpau_1046 YP_003646018.1 winged helix family two component transcriptional regulator VFG0596 Protein 1e-25 41
Tpau_1046 YP_003646018.1 winged helix family two component transcriptional regulator VFG1389 Protein 1e-27 41