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Name : Tint_3017 (Tint_3017) Accession : YP_003644679.1 Strain : Thiomonas intermedia K12 Genome accession: NC_014153 Putative virulence/resistance : Unknown Product : integrase catalytic subunit Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4584 EC number : - Position : 3200201 - 3201682 bp Length : 1482 bp Strand : - Note : PFAM: Integrase catalytic region; KEGG: vap:Vapar_2113 integrase catalytic region DNA sequence : ATGGACATGATTGGCAAGATCCGGCGGATGCATTTCCGCCAGAACAAATCCGCTCAAGTGATTGCCCGCAGTACGGGGCT GTCGCGCAACACGGTGCGTACCTGGCTACGCCAGCCGGGCGATGTCGTACCGCGGTACGCGGCGCGGCGAACACAACCCT CGCGCAAGCTCGCGCCCTATGTGGAGTGGCTCCGGCAGGCCGTGGCCATGGATGCGCAGCGTGCAGCAGCGCAGCGGCGC ACGGCCAGGGCATTGCATGCCGAGTTGAAGCGACAAGGCGATGACGGCGCCTACAGCCGCGTCACCGATTTACTGCGCGC CTGGCCACAGGCCGATGGCACGAGCGCTGTGCACGCCTTCGTGCCCTTGACGTTTGCGCTGGGCGAAGCCTTCCAGTTCG ACTGGAGTGAAGAGAGCATGGTGGTGGGCGGCGTGCCGTACCGCGTGCAGGTTGCCCACGTCAAGCTGTGCGCCAGCCGT GCCTTCTGGCTGGGGGCCTATCCCAGCCAAGGTCACGAGATGCTGTTTGACGCCCCTACCCAGGCGTTTGCCGCCTTCGG CGGAGTGCCGCATCGCGGCATCTATGACAACATGAAGACAGCCGTCGACAAAGTGCACCCGCGCAAGAAGCGCGACGTCA ACGCGCGCTTTGCGGCGATGTGCAGCCACTACCTGTTCGACCCCGACTTCTGCAACGTCGCTTCCGGTTGGGAGAAGGCG GTGGTGGAGAAGAACGTCCAGGACAGCAGGCGACGTGTGTGGATTGAGGCCCTGTCGACGCCCTGGCGCTCCTTTGCCGA ACTCAATGCCTGGCTGGCCATGCGCTGCCGGGCCTTGTGGCAGGAGATCTTCCATCCCGAGTTCAGCCAGTTCACCGTGG CCGAGATGCTCGAGCACGAGCAGCCGCACCTCATGCCCATGCCCACAGCGTTCGACGGCTATGTGGACAACACGGTCAAG GTCAGCAGCACCTGTCTGGTGGCCATGGCTGGCAATCGTTACTCCGTGCCCTGTGAACTCGCCGGGCGGCGGGTGAGCAC CCGGGTGTATCCCACCGAGGTGGTCGTGGTGCATGACGGCGTGTGTGTGGCCCACCATGCGCGGCTGGCCAACCGGGGAC AGACCCCCTACGACTGGCAGCACGATGTGCCGCTGATTCAACGCAAACCCGGGGCGTTGCGCAACGGCGCGCCGTTTGCC GATCTGCCCCAGCCCTTGCCGCAACTGCGCCAGGCGCTGCTGCGGCAAGGGCGGGGGCGACCGGCTCATGGCCCAGGTGC TGGCGCTGGTGCCCGCATCCGGGCTGGAGGCGGTGCTGGTGGCCGCCGCGCTGGTGCTCCAAGCCACGGCCCCGTCCGGG CGCATCAGTGTGGAGCATGGGGTCAACGTGATGGGGCGCTTGCAGACCGGCCCCCAGCCCGCCCAAGTGACCACGGCCTT GACGATGGCCGATCCACCCCGCGCCGACACGGCCCGCTATGA Protein sequence : MDMIGKIRRMHFRQNKSAQVIARSTGLSRNTVRTWLRQPGDVVPRYAARRTQPSRKLAPYVEWLRQAVAMDAQRAAAQRR TARALHAELKRQGDDGAYSRVTDLLRAWPQADGTSAVHAFVPLTFALGEAFQFDWSEESMVVGGVPYRVQVAHVKLCASR AFWLGAYPSQGHEMLFDAPTQAFAAFGGVPHRGIYDNMKTAVDKVHPRKKRDVNARFAAMCSHYLFDPDFCNVASGWEKA VVEKNVQDSRRRVWIEALSTPWRSFAELNAWLAMRCRALWQEIFHPEFSQFTVAEMLEHEQPHLMPMPTAFDGYVDNTVK VSSTCLVAMAGNRYSVPCELAGRRVSTRVYPTEVVVVHDGVCVAHHARLANRGQTPYDWQHDVPLIQRKPGALRNGAPFA DLPQPLPQLRQALLRQGRGRPAHGPGAGAGARIRAGGGAGGRRAGAPSHGPVRAHQCGAWGQRDGALADRPPARPSDHGL DDGRSTPRRHGPL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAN85144.1 | unknown | Not tested | Hrp PAI | Protein | 4e-115 | 62 |
| EC042_4098 | YP_006098381.1 | transposase | Not tested | Tn2411 | Protein | 5e-78 | 51 |
| istA | AAN62228.1 | putative transposase | Not tested | PAGI-3(SG) | Protein | 3e-59 | 45 |
