|
Name : Tint_1932 (Tint_1932) Accession : YP_003643625.1 Strain : Thiomonas intermedia K12 Genome accession: NC_014153 Putative virulence/resistance : Unknown Product : integrase catalytic subunit Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 2071360 - 2072268 bp Length : 909 bp Strand : + Note : KEGG: afe:Lferr_1426 integrase catalytic region; manually curated; PFAM: Integrase catalytic region DNA sequence : CTGAGGAACTTCGTCGACGAACATCGGCAGGCCTTCGGGGTCGAGCCGATCTGCAAAGTTCTGCAGATCGCCCCAAGCGG ATACCGCCTGCACGCAGCCCGGCAGCGCAACCCGGCGTTGCTGTCACCACGCGCCCAGCGCGATCAGCGGCTGATCCCCC ACGTCCAACAGGTCTGGCAAGCGAACCTGCAGGTCTATGGCGTGGATAAGGTCTACAAGCAGATGAACCGCGAGGGTGTG GCGGTGGCGCGCTGCACGGTGGAGCGACTCATGCGGCGCCTGGGCTTGCGCGGCGCCATCCGCGGCAAGGTGGTGCGCAC CACCATCGCCGATGCCAAGGCGCCGTGCCCGTTGGATCATGTCAACCGGGTCTTCAAGGCCGAGCGGCCCAATCAGCTCT GGGTGTCTGATTTCACCTATGTGTCCACCTGGCAAGGTTGGCTGTATGTGGCCTTCGTCATCGATGTGTTTGCCCGGCGC ATCGTCGGCTGGCGGGTAAGCAGCTCCATGCGCACGGACTTCGTGCTCGATGCCTTGGAGCAGGCGCTCTATGCCCGCCA ACCCGAACAGAACGAGACCTTGATCCATCACTCAGACAGAGGATCGCAGTATGTCAGCATTCGCTACACCGAGCGGCTGG CTGAAGCTGGAATTGAACCTTCTGTGGGCAGCAAAGGCGACTCCTATGACAACGCGCTGGCGGAGACGATCAACGGGCTG TACAAGGCGGAATTGATTCACCGTCGTGCCCCCTGGAAAACCAAGGAATCCGTCGAGCTGGCGACCCTGGAATGGGTGGC CTGGTTCAACCATCATCGCTTGATGGAACCCCTGGGCTATATCCCTCCGGCAGAAGCTGAGGCAAACTACTGGAGGCAGC AAGCCAGTCACGTCACCACTGTGGCCTGA Protein sequence : MRNFVDEHRQAFGVEPICKVLQIAPSGYRLHAARQRNPALLSPRAQRDQRLIPHVQQVWQANLQVYGVDKVYKQMNREGV AVARCTVERLMRRLGLRGAIRGKVVRTTIADAKAPCPLDHVNRVFKAERPNQLWVSDFTYVSTWQGWLYVAFVIDVFARR IVGWRVSSSMRTDFVLDALEQALYARQPEQNETLIHHSDRGSQYVSIRYTERLAEAGIEPSVGSKGDSYDNALAETINGL YKAELIHRRAPWKTKESVELATLEWVAWFNHHRLMEPLGYIPPAEAEANYWRQQASHVTTVA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL67406.1 | putative transposase | Not tested | PAI II CFT073 | Protein | 5e-66 | 66 |
| IS629 | CAI43840.1 | transposase for IS629 | Not tested | LEE | Protein | 2e-73 | 62 |
| IS629 | CAC37926.1 | transposase for IS629 | Not tested | LEE | Protein | 1e-73 | 62 |
| IS629 | CAI43821.1 | transposase for IS629 | Not tested | LEE | Protein | 1e-73 | 62 |
| IS629 | CAI43909.1 | transposase for IS629 1 | Not tested | LEE | Protein | 1e-73 | 62 |
| ECO111_3721 | YP_003236061.1 | putative IS629 transposase OrfB | Not tested | LEE | Protein | 1e-75 | 62 |
| ECO103_3585 | YP_003223443.1 | IS629 transposase OrfB | Not tested | LEE | Protein | 6e-74 | 62 |
| ECO111_3776 | YP_003236111.1 | putative IS629 transposase OrfB | Not tested | LEE | Protein | 1e-75 | 62 |
| unnamed | AAL67398.1 | putative transposase | Not tested | PAI II CFT073 | Protein | 2e-75 | 61 |
| APECO1_3499 | YP_854312.1 | transposase for IS629 | Not tested | PAI I APEC-O1 | Protein | 1e-74 | 61 |
| Z1660 | NP_287162.1 | transposase for IS629 | Not tested | TAI | Protein | 1e-74 | 61 |
| Z1221 | NP_286756.1 | transposase | Not tested | TAI | Protein | 6e-75 | 61 |
| c5178 | NP_757026.1 | transposase IS629 | Not tested | PAI II CFT073 | Protein | 3e-75 | 61 |
| ORF_34 | AAZ04444.1 | putative IS629 transposase | Not tested | PAI I APEC-O1 | Protein | 8e-75 | 61 |
| c5213 | NP_757061.1 | transposase IS629 | Not tested | PAI II CFT073 | Protein | 2e-75 | 60 |
| Z1638 | NP_287141.1 | transposase | Not tested | TAI | Protein | 2e-74 | 60 |
| Z1198 | NP_286733.1 | transposase | Not tested | TAI | Protein | 2e-74 | 60 |
| c5167 | NP_757015.1 | transposase IS629 | Not tested | PAI II CFT073 | Protein | 5e-52 | 59 |
| unnamed | CAD42083.1 | hypothetical protein | Not tested | PAI II 536 | Protein | 3e-72 | 59 |
| tnp7109-25 | YP_001800853.1 | transposase for insertion sequence | Not tested | Not named | Protein | 8e-59 | 47 |
| CDCE8392_1958 | YP_005134489.1 | transposase-like protein | Not tested | Not named | Protein | 3e-39 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Tint_1932 | YP_003643625.1 | integrase catalytic subunit | VFG1602 | Protein | 2e-72 | 59 |
