Gene Information

Name : Tint_1880 (Tint_1880)
Accession : YP_003643577.1
Strain : Thiomonas intermedia K12
Genome accession: NC_014153
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2026044 - 2026877 bp
Length : 834 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: xca:xccb100_2471 IS1477 transposase ORFB

DNA sequence :
ATGATCAGCGAGCATCATTTGTCCGAGCGCCGAGCGTGCTGCCTCGTGGGGCTAAGCAGAGATAGCTATCGCCATGCGCC
CCAGCAGGATGCGCTCAACACGGCACTGCACGGCAAGATCGTTGAGATTGCGCATGTCCGGCGGCGGTTCGGGTATCGGC
GCATCCACGACCTGCTGCGCCCAGCATTTCCGGGCATCAACCATAAGCGGGTGTATCGGCTGTACAGCCAGGCCAACCTG
GCTGTGCGCAAGCGCAAGAAGGTCCGGCGCGCGGCGGCCGAGCGCGTGCCGCTGCAACTGGCCAAAACGGTCAACGAGGT
GTGGAGCATGGATTTTGTCAGCGACAGTTTGGCCAACGGCCGGCGGTTGAAGTGTCTGACCGTGGCCGACGACTTCAGCC
ATGAATGCGTGGACATTGCGGTCGACTACGGCATTTCTGGCGCCTACGTGACGCGTCTGCTCGACCAAGCCGCGAGATTC
CGCGGCTACCCCGCAGCCGTCCGAACCGACAATGGACCGGAGTTCACCAGCCGTGCATTCATGGCGTGGGCCACGAGTCG
CGGCGTGCGCCACATCCTGATCGCACCGGGCAAGCCGACGCAGAATGGGTTCATCGAGAGCTTCAACGGCAAGTTCCGCG
ACGAGTGCCTCAACGAGCAATGGTTCGAGACGCTGCACCAAGCCAGAGTGACCATCGCTGAATGGCGCCGCGACTTCAAC
GAGGTCCGGCCCCACAGCAGTCTGGGCCGGATACCTCCGGCGCGATTCGCCGAGCAGCATCGCCAGCGCGCTGGCGATGC
TGCTCATCCCGCAACCCCCAACGAGGTGAATTAA

Protein sequence :
MISEHHLSERRACCLVGLSRDSYRHAPQQDALNTALHGKIVEIAHVRRRFGYRRIHDLLRPAFPGINHKRVYRLYSQANL
AVRKRKKVRRAAAERVPLQLAKTVNEVWSMDFVSDSLANGRRLKCLTVADDFSHECVDIAVDYGISGAYVTRLLDQAARF
RGYPAAVRTDNGPEFTSRAFMAWATSRGVRHILIAPGKPTQNGFIESFNGKFRDECLNEQWFETLHQARVTIAEWRRDFN
EVRPHSSLGRIPPARFAEQHRQRAGDAAHPATPNEVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13352.1 insertion sequence IS407 OrfB Not tested PAGI-5 Protein 2e-53 61
unnamed ABR13540.1 insertion sequence IS407 OrfB Not tested PAGI-8 Protein 4e-69 60
EXB25 ABD94712.1 hypothetical protein Not tested ExoU island B Protein 1e-43 57