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Name : Tint_1404 (Tint_1404) Accession : YP_003643120.1 Strain : Thiomonas intermedia K12 Genome accession: NC_014153 Putative virulence/resistance : Unknown Product : integrase catalytic subunit Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4584 EC number : - Position : 1513766 - 1515286 bp Length : 1521 bp Strand : - Note : PFAM: Integrase catalytic region; KEGG: vap:Vapar_2113 integrase catalytic region DNA sequence : ATGGACATGATTGGCAAGATCCGGCGGATGCATTTCCGCCAGAACAAATCCGTTCGAGAGATTGCCCGCAGTACGGGGCT GTCGCGCAACACGGTGCGTACCTGGCTACGCCAGCCGGGCGATGTCGTACCGCGGTACGCGGCGCGGCGAACACAACCCT CGCGCAAGCTCGCGCCCTATGTGGAGTGGCTCCGGCAGGCCGTGGCCATTGATGCGCAGCGTCCTAAAGCGCAGCGGCGC ACGGCCAGGGCATTGCATGCCGAGTTGAAGCGACAAGGCTATGACGGCGCCTACAGCCGCGTCACCGATTTACTGCGCGC CTGGCCACAGGCCGATGGCACGAGCGCTGTGCACGCCTTCGTGCCCTTGACGTTTGCGCTGGGCGAAGCCTTCCAGTTCG ACTGGAGTGAAGAGAGCATGGTGGTGGGCGGCGTGCCGTACCGCGTGCAGGTTGCCCACGTCAAGCTGTGCGCCAGCCGT GCCTTCTGGCTGGGGGCCTATCCCAGCCAAGGTCACGAGATGCTGTTTGACGCCCATACCCAGGCGTTTGCCGCCTTCGG CGGAGTGCCGCATCGCGGCATCTATGACAACATGAAGACAGCCGTCGACAAAGTGCACCCGCGCAAGAAGCGCGACGTCA ACGCGCGCTTTGCGGCGATGTGCAGCCACTACCTGTTCGACCCCGACTTCTGCAACGTCGCTTCCGGTTGGGAGAAGGGG GTGGTGGAGAAGAACGTCCAGGACAGCAGGCGACGTGTGTGGATTGAGGCCCTGTCGACGCCCTGGCGCTCCTTTGCCGA ACTCAATGCCTGGCTGGCCATGCGCTGCCGTGGCTTGTGGCAGGAGATCTTCCATCCCGAGTTCAGCCAGTTCACCGTGG CCGAGATGCTCGAGCACGAGCAGCCGCACCTCATGCCCATGCCCACAGCGTTCGACGGCTATGTGGACAACACGGTCAAG GTCAGCAGCACCTGTCTGGTGGCCATGGCTGGCAATCGTTACTCCGTGCCCTGTGAACTCGCCGGGCGGCGGGTGAGCAC CCGGGTGTATCCCACCGAGGTGGTCGTGGTGCATGACGGCGTGTGTGTGGCCCGCCATGCCCGGCTGGCCAACCGGGGAC AGACCATCTACGACTGGCAGCACTATGTGCCGCTGATTCAACGCAAACCCGGGGCGTTGCGCAACGGCGCGCCGTTTGCC GATCTGCCCCAGCCCTTGCAGCAACTGCGCCAGGCGCTGCTGCGGCAAGACGGGGGCGACCGGCTCATGGCCCAGGTGCT GGCGCTGGTGCCCGCATCCGGGCTGGAGGCGGTGCTGGTGGCCGCCGCGCTGGTGCTCGAAGCCACGGCCCCGTCCGGGC GCATCAGCGTGGAGCATGTGGTCAACGTGATGGGGCGCTTGCAGACCGGCCCCCAGCCCGCCCAAGTGACCACGGCCTTG ACGATGGCCGATCCACCCCGCGCCGACACGGCCCGCTATGACCGCCTGCGGGTGACTGACGAGGAGCGAGATCATGCGTG A Protein sequence : MDMIGKIRRMHFRQNKSVREIARSTGLSRNTVRTWLRQPGDVVPRYAARRTQPSRKLAPYVEWLRQAVAIDAQRPKAQRR TARALHAELKRQGYDGAYSRVTDLLRAWPQADGTSAVHAFVPLTFALGEAFQFDWSEESMVVGGVPYRVQVAHVKLCASR AFWLGAYPSQGHEMLFDAHTQAFAAFGGVPHRGIYDNMKTAVDKVHPRKKRDVNARFAAMCSHYLFDPDFCNVASGWEKG VVEKNVQDSRRRVWIEALSTPWRSFAELNAWLAMRCRGLWQEIFHPEFSQFTVAEMLEHEQPHLMPMPTAFDGYVDNTVK VSSTCLVAMAGNRYSVPCELAGRRVSTRVYPTEVVVVHDGVCVARHARLANRGQTIYDWQHYVPLIQRKPGALRNGAPFA DLPQPLQQLRQALLRQDGGDRLMAQVLALVPASGLEAVLVAAALVLEATAPSGRISVEHVVNVMGRLQTGPQPAQVTTAL TMADPPRADTARYDRLRVTDEERDHA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAN85144.1 | unknown | Not tested | Hrp PAI | Protein | 5e-143 | 60 |
| EC042_4098 | YP_006098381.1 | transposase | Not tested | Tn2411 | Protein | 1e-98 | 48 |
| istA | AAN62228.1 | putative transposase | Not tested | PAGI-3(SG) | Protein | 3e-76 | 44 |
