Gene Information

Name : Tint_1301 (Tint_1301)
Accession : YP_003643019.1
Strain : Thiomonas intermedia K12
Genome accession: NC_014153
Putative virulence/resistance : Virulence
Product : NAD-dependent epimerase/dehydratase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 1398626 - 1399639 bp
Length : 1014 bp
Strand : +
Note : PFAM: NAD-dependent epimerase/dehydratase; KEGG: lch:Lcho_3068 NAD-dependent epimerase/dehydratase

DNA sequence : 
ATGTCGATCGAGCAAATGCTGTCTTCGAAGCCCCAGCGCTGGCTGGTGACGGGGAGCGCCGGATTCATCGGCTCTCACCT
GATCCAAACGCTTCTGACCCATGGCCAGGACGTGGTCAGTCTGGACAATTTTTCAACCGGCCATCAATCCAATCTGGATG
AAGTGCGGCGCCTCGTCGGCGAAGAGGCCTGGAAGCGGCACACCTTCATCGAGGGCGACATTGTCGATCCGCAGACTTGC
CAGCAGGCCTGTCAGGGTGTCAACATTGTGTTGCATGAGGCGGCTTTGGGATCTGTGCCGCGCTCGATTGAAAACCCGCT
GGCAACGCATGCAGTCAACGCCACGGGTTTTCTGAACATGCTGGTCGCCGCGCGCGACGCGGGCGTGAGCCGCTTCGTTT
ATGCGGCTTCCAGCTCCACCTATGGCGATCACCCGGGCTTGCCCAAGGTCGAGGACCTCATCGGCAAGCCGCTGTCGCCC
TATGCGGTAACTAAATATCTCAACGAACTTTATGCCGACGTGTTCGGCCGGGTCTATGGCTTGCAGAGCATCGGGCTGCG
CTATTTCAACGTGTTCGGCACCCGCCAGGATCCCAATGGCCCTTATGCGGCGGTCATTCCCAATTGGGCCAAAGCCATCC
GCGGCAATCAGCCTTGTTTCATCAATGGCGACGGCGAAACCACGCGCGACTTCTGCTATGTCGACAACGTGGTGCAGGCC
AATGTGCTGGCGGGGTTGAGTACCCATCCTGAATCGGCGAATCAGGTCTACAACGTGGCGTTTGGCGAGCAGACCAGCCT
GAACACCCTTCACCAGTTGTTGAGCGAGGAAATCATGGCGCTCGACACTAGCGTGAAATTCACCCCGCCGGTTTACCGCG
ACTTTCGCAAGGGTGACGTGCGGCATTCCCTTGCCGACATCAGCAAGGCCAAACGCCTGCTGGGCTACAGCCCCGATTTC
AGCGTGCGCGCCGGCTTGAAAATCGCCATGCCGTGGTACGTTGCCAAGTCGTAA

Protein sequence : 
MSIEQMLSSKPQRWLVTGSAGFIGSHLIQTLLTHGQDVVSLDNFSTGHQSNLDEVRRLVGEEAWKRHTFIEGDIVDPQTC
QQACQGVNIVLHEAALGSVPRSIENPLATHAVNATGFLNMLVAARDAGVSRFVYAASSSTYGDHPGLPKVEDLIGKPLSP
YAVTKYLNELYADVFGRVYGLQSIGLRYFNVFGTRQDPNGPYAAVIPNWAKAIRGNQPCFINGDGETTRDFCYVDNVVQA
NVLAGLSTHPESANQVYNVAFGEQTSLNTLHQLLSEEIMALDTSVKFTPPVYRDFRKGDVRHSLADISKAKRLLGYSPDF
SVRAGLKIAMPWYVAKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 3e-97 59
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 3e-97 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tint_1301 YP_003643019.1 NAD-dependent epimerase/dehydratase VFG0430 Protein 1e-97 59