Gene Information

Name : Tint_1300 (Tint_1300)
Accession : YP_003643018.1
Strain : Thiomonas intermedia K12
Genome accession: NC_014153
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 1397339 - 1398619 bp
Length : 1281 bp
Strand : +
Note : KEGG: lch:Lcho_3069 nucleotide sugar dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase

DNA sequence : 
ATGACAGTAGTTGCTGTGGTGGGATTGGGGTATGTCGGTCTTCCTTTGGCCGTCGAGTTTGGTAAAAAATATCGCACGAT
CGGATTCGACCTCTCGGTCGAAAAAATAGCGGCTTATTGCAAGCATGTCGATCCGACCGGGGAAGTCAGTCAGGAGAACC
TCAAGCAGGCGACCTTGCTCGAGCCGACAACCGATGCCTCGAAACTGAAGGAGGCCGACTTTGTGATCGTCGCCGTGCCG
ACGCCAGTTGACGATGCCCATAATCCGGATTTCAGCCCCCTCGTGGGCGCCAGCACCTCCGTTGGCAAATATCTCAAACC
CGGCGCCATCGTGGTCTATGAATCGACCGTTTATCCTGGGGCTACCGAAGAAATCTGTGTGCCGATTCTTGAAAAACAGT
CGGGGCTGAAGTGGAAAAAAGATTTCTTCGTTGGCTATTCACCCGAGCGTATCAATCCAGGCGACAAAGAGCACACCCTG
ACCCGAATCGTCAAGGTGGTTTCCGGAGATACCCTGGAAACGCTTGAAACCGTCGCAAATGTTTATGCCTCGGTGATTAC
GGCCGGGGTTCACCGAGCCGAAAGCATCAAAGTGGCCGAGGCGGCGAAAGTGATTGAAAACACGCAGCGCGATCTGAATA
TTGCGCTGATGAATGAGTTGTCGCTCATTTTCCACCGCATTGGCATTGATACGCTGGACGTGCTCAAGGCGGCAGGTACA
AAGTGGAATTTCCTGCCATTTCGTCCGGGCCTGGTGGGTGGGCATTGCATCGGTGTCGATCCTTATTACCTCACGCACAA
GGCCGACATGCTCGGCTATCACCCGCAAGTGATTCTGGCGGGGCGTCGCATCAATGACGGTATGGGCAAATACATCGCTG
AACAGACGATCAAGCAAATGAGTCAGGCGGGCCTACCGATCAAGGGGAGCGACGTGATCGTTCTCGGTCTGACCTTCAAG
GAAAACTGCCCCGATCTGCGCAATTCCAAGGTGATCGACGTGATTCGCGAACTGGCGTCATATGGGGTCAACGTGATCGT
GCACGACCCCATTGCCGATGCAGGCGAGGCTGTGCATGAATATGGCGTCACGCTCACGCCTTGGGCCGAATTGCCTCGCG
CTCAGGCGATCGTGGCGGCCGTGGCGCACCAAGCCTACAAGGACATGTCGGTGGCCGAAACTCTCGAAAAGCTGCTGCCG
TCTGGCATTTTCATGGACATCAAGTGCCAATACGACGCTGCCGCGCTCCAGTCGCACGGTGCCCAGGTCTGGAGACTTTG
A

Protein sequence : 
MTVVAVVGLGYVGLPLAVEFGKKYRTIGFDLSVEKIAAYCKHVDPTGEVSQENLKQATLLEPTTDASKLKEADFVIVAVP
TPVDDAHNPDFSPLVGASTSVGKYLKPGAIVVYESTVYPGATEEICVPILEKQSGLKWKKDFFVGYSPERINPGDKEHTL
TRIVKVVSGDTLETLETVANVYASVITAGVHRAESIKVAEAAKVIENTQRDLNIALMNELSLIFHRIGIDTLDVLKAAGT
KWNFLPFRPGLVGGHCIGVDPYYLTHKADMLGYHPQVILAGRRINDGMGKYIAEQTIKQMSQAGLPIKGSDVIVLGLTFK
ENCPDLRNSKVIDVIRELASYGVNVIVHDPIADAGEAVHEYGVTLTPWAELPRAQAIVAAVAHQAYKDMSVAETLEKLLP
SGIFMDIKCQYDAAALQSHGAQVWRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 1e-106 59
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-95 58
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-95 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tint_1300 YP_003643018.1 nucleotide sugar dehydrogenase VFG0431 Protein 7e-96 58