Gene Information

Name : Tint_1120 (Tint_1120)
Accession : YP_003642840.1
Strain : Thiomonas intermedia K12
Genome accession: NC_014153
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1198808 - 1199518 bp
Length : 711 bp
Strand : -
Note : KEGG: ppd:Ppro_3849 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGACAGGCAGAGGCATCCGCATCGAAGGACTGAAAAAGCGCTACGGCAGCGGCGACACCGCGGTGGACGCGCTCAAGGG
CGTGGACATGGAGGTCGCGCCGGGTGAAGTGGTCGGGCTGGTCGGCCCCTCGGGCTCGGGCAAGAGCACCCTGCTGAAGT
GTCTGGGCGCGGTGATCGAGCCGACCGCCGGACGCATGACTCTGGGCAACGAGGTGATCTACGACGATGGCTGGAAGATT
CGCGACCTGCGTGCCCTGCGCCGCGACAAGATCGGCTTCGTGTTCCAGGCGCCGTATCTCATTCCTTTCCTCGACGTCAC
CGACAACGTCGCGCTGCTGCCCATGCTCGCTGGCGAACCCAACGGCAAAGCGCGCCAGCGTGCGCTGGAACTGCTCACCG
CGCTCGACGTGCAGCACCGTGCCAAGGCCATGCCCTCGCAGCTCTCCGGCGGCGAGCAGCAGCGCGTGGCCATCGCCCGC
GGCCTGGTCAACCGTCCGCCGGTGATCCTCGCCGATGAGCCCACTGCGCCGCTCGACAGCGTGCGCGCGCTGGCGGTGAT
CCGCATCCTGGGCGACATGGCCAAGCGCTACCAGACCGCCGTCATCGTGGTCACCCACGACGAAAAGATCATCCCCACCT
TCAAGCGCATCTATCACATCCGCGACGGCGTGACCCACGAGGAAGCCGGCGAAGGACGGGGCTTCGACTGA

Protein sequence : 
MTGRGIRIEGLKKRYGSGDTAVDALKGVDMEVAPGEVVGLVGPSGSGKSTLLKCLGAVIEPTAGRMTLGNEVIYDDGWKI
RDLRALRRDKIGFVFQAPYLIPFLDVTDNVALLPMLAGEPNGKARQRALELLTALDVQHRAKAMPSQLSGGEQQRVAIAR
GLVNRPPVILADEPTAPLDSVRALAVIRILGDMAKRYQTAVIVVTHDEKIIPTFKRIYHIRDGVTHEEAGEGRGFD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-33 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-34 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tint_1120 YP_003642840.1 ABC transporter CP001581.1.gene798.p Protein 4e-38 45
Tint_1120 YP_003642840.1 ABC transporter NC_012469.1.7686878. Protein 2e-34 41