Gene Information

Name : TherJR_0243 (TherJR_0243)
Accession : YP_003639032.1
Strain : Thermincola potens JR
Genome accession: NC_014152
Putative virulence/resistance : Virulence
Product : ATPase AAA
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 262491 - 264923 bp
Length : 2433 bp
Strand : +
Note : KEGG: pth:PTH_0283 ATPase with chaperone activity, ATP-binding subunit; PFAM: ATPase AAA; Clp domain protein; ATPase AAA; UvrB/UvrC protein; Clp ATPase-like; SMART: ATPase AAA

DNA sequence :
ATGTTTGCAAGATTTACAGAAAGGGCCCAAAAAGTATTAATGTTGGCCCAGGAGGAAGCGAAACGACTTAATTACACGTA
CGTCGGTACAGAGCATATTTTACTGGGGTTAATTCAAGAGGGTAGTGGTATTGCTGCAAAAGTACTTTATGAATTAGGCG
TTGATTTCAATAAGGTCCGCTCTGAAGTAGAGAAAATGATTGGCAAAGGTGAATTTTACACCTTTGGTGAAATTGGACTT
ACCCCACGGGCGAAAAAGGTCCTGGAGCTGGCTTTTGATGAAGCTAGAAAACTGGGACACAACTACATTGGTACCGAGCA
CTTGCTATTGGGGCTCATCAGGGAAGGAGAAGGTGTCGCTGCTCGGGTTTTGCACAACTTGGGCGTAGATTTTCAAAGTG
TGCAAAAGAGTGTCATCAACATGCTGGGTACAGCGCAGCCTCATGGCGGTCCGGCTCAGCCTGGTAAGAAGCAAGCCAAC
ACGCCAACTTTAAACGAATTCGGGCGTGATTTAACTGAGATGGCCAGGGAAGGAAAGCTCGATCCCGTAGTTGGCCGGGA
AAAGGAAATTGAAAGAGTGGTCCAGGTGTTGAGCAGGCGGACCAAAAACAATCCAGTTTTAATTGGTGAACCGGGTGTTG
GGAAGACAGCTATTGCCGAGGGATTGGCGCAAAGGATTATTGCCGGTAATGTACCGGAAACATTGAATGACAAAAGGGTT
GTAACGCTTGACATGGCTTCGGTGGTGGCGGGTACAAAATTCAGGGGGGAATTTGAAGACCGCCTGAAAAAGGTTATTGA
TGAAATCAGGGCTGCCGGGAACGTGATCCTTTTTATTGATGAATTGCATACCCTGATTGGCGCTGGAGCGGCCGAAGGCG
CTATCGATGCCGCTAACATTTTAAAACCTGCTCTAGCCAGAGGAGAATTACAGTGTATCGGCGCTACCACGCTGGATGAG
TACAGAAAACACATTGAACGGGACCCGGCATTGGAACGCCGGTTCCAACCCATTACTGTTGATGAGCCGACGGTAGAAGA
GTCAATAGACATTCTTAAAGGCTTGCGGGACAGGTATGAGGCTCATCACCGGGTCCAGATTACAGACGAGGCTATTAACA
GCGCTGTCAGGCTTTCAGACCGGTATATTACTGACCGGTTCCTGCCTGACAAGGCTATTGACCTTATTGATGAAGCTGCT
TCCAGGGTAAGACTGCAGACTTTTACCGTACCGCCGGATGTGAAAAAGCTGGAAGCAGAGTTGGAGGAAATAAAGAAAGA
AAAAGAAGCCGCCATTTCAGCTCAGGAGTTTGAAAAGGCTGCCGGTTTAAGGGATAAAGAACAAAAACTCAAAGCCAAAC
TGGAAGATACCAAAAAAGGCTGGGAAGAGAAGAAAGGATTGGCAAAGAAGGCAGTAACAGAAGACGATATAGCTCATATT
GTTTCCTCCTGGACCGGGATTCCTGTCAGTAAACTGGCCCAGGAAGAAACAACCCGCCTGTTAAATATGGAAGAAATATT
GCATCAGCGGGTAATTGGGCAGGATGAAGCGGTTAAAGCTGTAAGTCGTGCTGTTCGCCGGGCCAGAGCGGGGTTAAAGG
ATCCCAAGCGGCCCATTGGTTCCTTCATTTTCCTTGGCCCCACCGGTGTGGGTAAAACTGAGTTAGCCCGGGCTCTTGCG
GAGGCTTTGTTCGGCGATGAGGATGCCATGGTCAGGATTGATATGTCTGAATATATGGAAAAACACGCGGTATCCAGGCT
GGTTGGAGCTCCTCCGGGGTATGTTGGCTACGATGAAGGTGGGCAGCTAACAGAGGCTGTCCGCAGAAAACCATATTCTG
TAGTATTGCTGGATGAAATAGAAAAGGCCCATCCGGAAGTTTTCAACATTCTTCTGCAGGTACTGGAAGACGGAAGGCTC
ACTGATGCTAAGGGAAGAACCGTGGATTTCAGGAATACCGTGATTATCATGACCTCCAACGTCGGAGCGCATCTGATTAA
AAAAGAAGCTACTCTTGGGTTCAAGACAACAGCCCAGGACACCAATTATGACAACATGAGAGAACGGGTTACCGGCGAGC
TTAAGCGCACATTCCGGCCGGAATTCTTGAACAGGATTGACGAAATAATTGTTTTCCATTCCCTCAAAAAAGAGCATATT
AAGAAGATAGTTGAACTGATGCTCAAAGAAGTTGCCGAACGAATGAAAGAGAATGATATAGAAATAGAAGTCACCGACGA
GGCCAAAGAACTTTTGGCCAAAGAAGGATTTGACGAGATGTTTGGGGCCAGACCGCTGCGGCGGGCTATTCAGAAAACAG
TGGAAGATCAACTTTCCGAAGAATTTTTAAAAGGTACTTTCAAACCGGGTGATAAAGTAGTAGTTACTGCGAAAGACGGA
CAAATTGTGGTAAGTAAAGCAGTTGCTGTTTGA

Protein sequence :
MFARFTERAQKVLMLAQEEAKRLNYTYVGTEHILLGLIQEGSGIAAKVLYELGVDFNKVRSEVEKMIGKGEFYTFGEIGL
TPRAKKVLELAFDEARKLGHNYIGTEHLLLGLIREGEGVAARVLHNLGVDFQSVQKSVINMLGTAQPHGGPAQPGKKQAN
TPTLNEFGRDLTEMAREGKLDPVVGREKEIERVVQVLSRRTKNNPVLIGEPGVGKTAIAEGLAQRIIAGNVPETLNDKRV
VTLDMASVVAGTKFRGEFEDRLKKVIDEIRAAGNVILFIDELHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDE
YRKHIERDPALERRFQPITVDEPTVEESIDILKGLRDRYEAHHRVQITDEAINSAVRLSDRYITDRFLPDKAIDLIDEAA
SRVRLQTFTVPPDVKKLEAELEEIKKEKEAAISAQEFEKAAGLRDKEQKLKAKLEDTKKGWEEKKGLAKKAVTEDDIAHI
VSSWTGIPVSKLAQEETTRLLNMEEILHQRVIGQDEAVKAVSRAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
EALFGDEDAMVRIDMSEYMEKHAVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSVVLLDEIEKAHPEVFNILLQVLEDGRL
TDAKGRTVDFRNTVIIMTSNVGAHLIKKEATLGFKTTAQDTNYDNMRERVTGELKRTFRPEFLNRIDEIIVFHSLKKEHI
KKIVELMLKEVAERMKENDIEIEVTDEAKELLAKEGFDEMFGARPLRRAIQKTVEDQLSEEFLKGTFKPGDKVVVTAKDG
QIVVSKAVAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TherJR_0243 YP_003639032.1 ATPase AAA VFG0079 Protein 0.0 70
TherJR_0243 YP_003639032.1 ATPase AAA VFG0080 Protein 2e-149 51