Gene Information

Name : TherJR_0230 (TherJR_0230)
Accession : YP_003639019.1
Strain : Thermincola potens JR
Genome accession: NC_014152
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG1190
EC number : -
Position : 241776 - 243245 bp
Length : 1470 bp
Strand : +
Note : KEGG: chy:CHY_2365 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type

DNA sequence : 
ATGAGTCGGGATTTAGAAACAAATGAACTGTTCCAAGTACGCCTTAATAAGCTGGACGAGCTTCGCAAGCAGGGAATTGA
CCCTTTTGGAGAAAAATTTGTGCGTACTCATTTAACTAAAGAAGTTATAGAAAACTTTGACCGGTTGGAGGGTCAAGAAG
TGACGCTGGCCGGTCGGTTAATGGCCAAGCGGGGACAGGGGAAAGCCGGATTTTCTAATATCCAGGATTTAACCGGGCGG
ATCCAGCTTTATACAAGGTTAGATGATTTGGGAGAAGAAGAATTCAAAAGGTTTAGCCATTTGGACATTGGTGATATTAT
TGGCGTTACAGGAAAAGTGTTTAAAACTCAAAAAGGCGAAATTAGTATTTGGGTTAAGTCTTATAAGTTGTTATGTAAGT
CTTTAAGGCCGTTACCTGAAAAATGGCATGGGCTTAAAGATGTTGAATTAAGATACCGTCAACGGTATATTGACCTGATT
GTGAATCCAGAGGTAAAAGAAGTCTTTGTGACAAGAAGTAAAATAATCAGGGCTATTCGCAACTACTTGGACAAGCTGGG
TTTTCTGGAAGTAGAAACCCCCATGATGCACCCCATTGCCGGTGGCGCCACTGCCAGACCATTTATTACCCATCATAATG
CCCTCGACATGGATCTATATCTCCGGATTGCTCCGGAATTATATCTGAAACGTTTAATTGTTGGCGGTCTGGAAAAGGTA
TATGAAATAAACAGAAACTTCAGAAATGAAGGAATCTCAACCAAGCACAACCCTGAATTTACTATGCTGGAGCTTTATGA
AGCTTATGCCGATTACGAGGATATGATGGTCTTGACGGAAAACCTTGTTTCAACGGTTGCTAAAGAAGTCCTGGGAACTG
ATAAAATCGTTTATCAGGGTACAGAAATCGACTTGGCGGCACCATGGCGCAGAGTGCCTATGCTGGAGGCAATAAAAGAG
GAAACCGGTGTAGATTTTTCTGTTATAAATACCGATGCAGAAGCTATTGAAGCAGCTCAAAAGCTGGGGATTAAATTAGA
AGAAGGGGTAAGCAAAGGAACCGTTATTAATGAGGTGTTTGAGACATTTGTGGAGCCCAAATTGGTTCAACCCACGTTTG
TAATTGATTATCCTATAGAAATTTCGCCTCTTGCCAAGAGGAAAAAGGACAATCCTGCTTATACATACAGATTTGAAGCA
TTTATATATTCAAGGGAAACGGCTAACGCATTTTCGGAGTTAAATGACCCTATTGACCAGGAAGAAAGGTTCCGGAAACA
AGTAGAAAAAAGGGCCAAAGGCGATGATGAGGCCCATATGATGGACGAGGATTATATTAATGCTCTGCAAATTGGTTTAC
CGCCAACCGGCGGTTTAGGTATCGGGATTGACCGGTTAGTTATGCTGCTTACCGATTCAGCGTCAATTCGCGATGTACTG
TTATTCCCGCTGATGCGTCCCAGGGATTAA

Protein sequence : 
MSRDLETNELFQVRLNKLDELRKQGIDPFGEKFVRTHLTKEVIENFDRLEGQEVTLAGRLMAKRGQGKAGFSNIQDLTGR
IQLYTRLDDLGEEEFKRFSHLDIGDIIGVTGKVFKTQKGEISIWVKSYKLLCKSLRPLPEKWHGLKDVELRYRQRYIDLI
VNPEVKEVFVTRSKIIRAIRNYLDKLGFLEVETPMMHPIAGGATARPFITHHNALDMDLYLRIAPELYLKRLIVGGLEKV
YEINRNFRNEGISTKHNPEFTMLELYEAYADYEDMMVLTENLVSTVAKEVLGTDKIVYQGTEIDLAAPWRRVPMLEAIKE
ETGVDFSVINTDAEAIEAAQKLGIKLEEGVSKGTVINEVFETFVEPKLVQPTFVIDYPIEISPLAKRKKDNPAYTYRFEA
FIYSRETANAFSELNDPIDQEERFRKQVEKRAKGDDEAHMMDEDYINALQIGLPPTGGLGIGIDRLVMLLTDSASIRDVL
LFPLMRPRD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 9e-113 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TherJR_0230 YP_003639019.1 lysyl-tRNA synthetase VFG1668 Protein 5e-113 54