Gene Information

Name : TherJR_1783 (TherJR_1783)
Accession : YP_003640533.1
Strain : Thermincola potens JR
Genome accession: NC_014152
Putative virulence/resistance : Unknown
Product : riboflavin biosynthesis protein RibD
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0117
EC number : -
Position : 1832444 - 1833601 bp
Length : 1158 bp
Strand : -
Note : KEGG: adg:Adeg_1982 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding

DNA sequence :
ATGATAAAAACCGACGTAAAATATATGCGCATGGCTCTTGAACTGGCCGCAAAAGCAAGAGGAAATACAAGTCCGAACCC
TATGGTGGGGGCAGTTATTGTCAAAGACGGCCGGGTTATTGGCAAGGGTTATCATATGAAAGCCGGGACTCCCCATGCTG
AAGTGCATGCACTCCGGGAAGCGGGCGAATTAAGCAGGGGCGCTACCATGTATGTTACCTTGGAACCCTGTTCCCATTAC
GGGCGGACACCCCCGTGCAGTAAAGCAGTGATTGCAGCAGGGGTGGCGCGGGTGGTTGTAGCCATGGAAGACCCCAACCC
ATTAGTATCCGGCCAGGGCATTCAGCAAATGAGAGAAGCCGGGATACAGGTGGAAGTAGGGTTAATGGAAAAAGAGGCCA
GAGAATTAAACGAAGTTTTTATTAAATACATAAAAACACGCCGGCCTTTTGTTGTAATGAAGTCTGCTATGACCCTGGAC
GGCAAAATTGCTACGGCTACGGGGCATTCTCGGTGGATTACGGGGGAGGAGGCCCGCCGGCTGGTGCACCTATGGCGGAG
CTGGTATGATGCGATTTTGGTAGGCATCGGTACTGTGCTGACCGATAACCCTTTGTTGACCTGCCGGCTGGAGGACCGTC
AAGCCCAAAATCCTGTCCGCATTATTTTAGACAGTTTAGGTAGACTGCCTGTTGATGTAAATGTTCTGAAAACCATAGAA
CAGGCTCCTGTTATTGTGGTGTCCACAGAAAAAATACCCCGGGAACGCAAGGCGGTTCTGGAAAAACTGGGAGCGGAAGT
CCTGGTGTTGCCGGAGCGGGAAGGCCGACCTGACCTGGCGGCGCTGCTGGATGAATTGGGCCGGCGGGAAATTACTTCTC
TCTTTGTGGAGGGTGGCGCTACGGTAAACGCATCTTTTCTTAAAAACCGCTTGGCCGACAAAACGGTCTGGTTTGTGGCT
CCTAAAATTGTCGGCGGCCCTCAGGCGCCAGGGCCTGTTGGCGATATGGGTATTCAGTTTATGGACGAGTGTTTGAACAT
AAAGAATATGTCTGTGCAGGATATTGGCCCAGACCTTTTGATTACGGGCTACCCCGATTACGGGGACAAAGAACCGGCTG
CAGGCAAGAGAGGTAGGTGCAGATGTTTACCGGTATAG

Protein sequence :
MIKTDVKYMRMALELAAKARGNTSPNPMVGAVIVKDGRVIGKGYHMKAGTPHAEVHALREAGELSRGATMYVTLEPCSHY
GRTPPCSKAVIAAGVARVVVAMEDPNPLVSGQGIQQMREAGIQVEVGLMEKEARELNEVFIKYIKTRRPFVVMKSAMTLD
GKIATATGHSRWITGEEARRLVHLWRSWYDAILVGIGTVLTDNPLLTCRLEDRQAQNPVRIILDSLGRLPVDVNVLKTIE
QAPVIVVSTEKIPRERKAVLEKLGAEVLVLPEREGRPDLAALLDELGRREITSLFVEGGATVNASFLKNRLADKTVWFVA
PKIVGGPQAPGPVGDMGIQFMDECLNIKNMSVQDIGPDLLITGYPDYGDKEPAAGKRGRCRCLPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00293 YP_008211619.1 Pyrimidine deaminase Not tested AbaR26 Protein 4e-54 42
BJAB07104_00289 YP_008207754.1 Pyrimidine deaminase Not tested AbaR25 Protein 4e-54 42