Gene Information

Name : Cfla_3288 (Cfla_3288)
Accession : YP_003638367.1
Strain : Cellulomonas flavigena DSM 20109
Genome accession: NC_014151
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 3648705 - 3649667 bp
Length : 963 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: gbr:Gbro_4660 integrase catalytic region

DNA sequence : 
GTGGCCTACCTCGACGCGCACCGTCACCAGGTCGTCGAGGGACGCCAGCTCGGGGTCGAGCCGATCTGCGCGGTGCTCAA
GGACACCGCCGCGAAGATCGCTCCGAGCACGTACTACGCGGCCAAGACCAGGAAGCCCTCGGCGCGGGCGGTGCGTGACG
CGCGCCTACTGCCGCTGGTCCGCAAGGTCCACGCCGACAACCTGGGCGTCTACGGGGCGCGCAAGGTCTGGGCCGAGCTG
AACCGCCAGGGCACGACGGTGGCCCGGTGCACGGTCGAACGGCTGATGACGGCCGACGGGTTGCGCGGGATCGCCCGGGA
GAAGACGACCCGCACGACGGTCAGTCACGGCGCGCAGAGCGAGCGGCCCGGTGACCTGGTCGAGCGGGAGTTCGTCGCCG
ATGCGCCGAACCGGTTGTGGGTCGCGGACATCACCTACATCCGCACGCACGCCGGCTGGACGTATGCCGCGTTCGTGCTC
GACGTGTTCTCCCGCTACGTCGTGGGCTGGCAGGTCTCCACGTCGCTGCGCACCGATCTGGCGCTGCACGCCCTGGACAT
GGGGTTGTGGGCCCGGCGGCGGGCCGGTCAAGACGTGACCGGGCTGACCCACCACTCGGACAGGGGCGTTCAGTACCGAG
CGGTGCGCTACACCGAGCGCCTCGCCGAGGCGAACGCCGTCGCCTCGGTCGGGTCCAAGGGCGACTCCTACGACAACGCG
ATGGCCGAAGCGTTCAACTCGCTGTTCAAGGCCGAGTGCATCCGCAACCCCACGATGCGCCCGACCGGCGGCTGGAAGAC
CATCACCGATGTCGAGCTCGCCGTCGCGGAGTACGTCGACTGGTTCAACCACCGACGCCTGCACGGCGAGATCGGCCTCG
TCCCACCCGCCGAGCACGAGCAGCACCACTGGCAGCACTACGCTGCCCACAACCCGGCCGAACTCGAGGCCGTAGCCACG
TAA

Protein sequence : 
MAYLDAHRHQVVEGRQLGVEPICAVLKDTAAKIAPSTYYAAKTRKPSARAVRDARLLPLVRKVHADNLGVYGARKVWAEL
NRQGTTVARCTVERLMTADGLRGIAREKTTRTTVSHGAQSERPGDLVEREFVADAPNRLWVADITYIRTHAGWTYAAFVL
DVFSRYVVGWQVSTSLRTDLALHALDMGLWARRRAGQDVTGLTHHSDRGVQYRAVRYTERLAEANAVASVGSKGDSYDNA
MAEAFNSLFKAECIRNPTMRPTGGWKTITDVELAVAEYVDWFNHRRLHGEIGLVPPAEHEQHHWQHYAAHNPAELEAVAT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 2e-47 51
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 9e-47 50
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 2e-59 50
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-59 50
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-59 50
Z1221 NP_286756.1 transposase Not tested TAI Protein 3e-59 50
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 6e-54 50
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 1e-57 49
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-58 49
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 7e-58 49
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 7e-59 49
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 1e-57 49
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 1e-57 49
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-59 49
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 3e-59 49
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 6e-59 49
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-59 49
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 2e-59 48
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 3e-59 48
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 1e-56 48
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 2e-50 41
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 1e-37 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cfla_3288 YP_003638367.1 integrase catalytic subunit VFG1602 Protein 6e-57 48