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Name : Plim_0410 (Plim_0410) Accession : YP_003628459.1 Strain : Planctomyces limnophilus DSM 3776 Genome accession: NC_014148 Putative virulence/resistance : Virulence Product : type II secretion system protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 515847 - 517544 bp Length : 1698 bp Strand : - Note : PFAM: type II secretion system protein E; general secretory system II protein E domain protein; SMART: ATPase AAA; KEGG: scl:sce4467 type IV pilus biogenesis protein PilB DNA sequence : ATGGCGGATGATTACCTTCGCAAACTGATCAAGGATGGTCTCATCAGTAAGGATCAGCTTGGTGAAGCAGAGGACCTCGG CCGCAGTATGGGGATCTCGATTTCTGACGCCCTCATTAAACTGGGGTACGTGGGAGCGAGCGAGTTGGGCCAGAGGCAGG CCGCCGCTTTCGGCTACCAGTATGTCAGTCTGGACGGGATGGAGATCTCCAGTGGTGTGATCGGGCTGCTTCCCGAATCG GTTGCTCGCGAAAACATCGTGATCCCGCTGGCGATGGACGACGACCGGCTGAAGATCGCGATCAGCGACCCGATGAACTA TGAGGTGCTTGATAAACTCCGATTTCTGCTGAACCGTGATATCGATCTGGCAGTGGCCTCGAAAGAATCGATTCAAAATG CCATCAATCGGCATTATGGCCAGAGTGAAACGGAATCTGTCGATTCGATTCTGCTGGAGTTCACCGAAACAGCCATTGAT TTTACGGCGACGGATATTCCTTCATCGGCTGCCACGACTGCGGAGGAGAATGCCCCGATTGTCCGCCTGGCAAATCTGAT TGTCAGTGAAGCCGTGAACATGCGTGCCTCCGACATTCATATTGAGCCTTTTGAAGACAAGGTGCGTGTTCGCTACCGAA TTGACGGAGTGCTGGTCGAACGAGACAGCCCCCCCAAGCGGCTGCATTCGGCACTGATTTCCCGTTTCAAGATTATGGGA AATATGGATATTGCCGAGAAGCGGCGGCCCCAGGACGGACGCATCAAGACCCGCATCAACGGCCAGGACTTTGACCTGCG AGTCAGCATTCTCCCCACTGGTTTTGGCCAGGCCATCGTGATGCGAATCCTCGATCGCAACAATATTAAAGTGGGGATCC GCAGCCTGGGGTTGTCGGACGAGAATTACCGCAGGTTCAACAACACGATTCGACGTCCGAACGGAATCTTCCTGGTGACA GGGCCCACCGGTTCCGGGAAGACCACCACTTTGTACAGTGCCCTGGGCGAAATGAACCGGCCGGACAAAAAGATCATCAC GGCTGAAGACCCTGTCGAGTATTACCTGCCCGGAATCAATCAGGTCGAAGTGAAGGCCGACATTGGATTGAACTTTGCAC GCATTATTCGTGCGATGTTGCGGCAAGCTCCGAACATCATTCTGGTGGGGGAAATTCGAGATGCCGAGACCGCTCAGATG GCAATTCAGGCTTCTTTAACTGGACACCTGGTTTTCAGTACTCTTCACACGAACGACGCACCCAGTTCTATTACACGTCT GATTGACATGGGGGTCGAGCCATTTCTGGTGGCATCGTCGATTGTGGCCATTATGGCGCAGCGACTGGTGCGTACCGTCT GTCCGAAGTGCAAAGAACCTTATGCACCCGACCCCAGCGAAATTGCACACTTTGCCCTGACACCAGAACAGGTTGCAGGA GCGAACTTTATGCGAGGCAAGGGTTGTAATCACTGCCAGCAATCAGGTTATCGAGGTCGAGCCGCTGTGTTCGAGCTGAT GATGATGAACTCCACATTGCGTGAAATGACATTTAAAGGGGAACCTTCCCAGTCACTGCGGAGACAGGCGCGACTGTTCG GCATGAAGACGCTGGTCGAAGATGCCGTCGACAAGGCCTTGATCGGAAAGTCAACGCTGCTTGAGGCTTACAAGCTTGAC AAGGGGAGCGGACACTAG Protein sequence : MADDYLRKLIKDGLISKDQLGEAEDLGRSMGISISDALIKLGYVGASELGQRQAAAFGYQYVSLDGMEISSGVIGLLPES VARENIVIPLAMDDDRLKIAISDPMNYEVLDKLRFLLNRDIDLAVASKESIQNAINRHYGQSETESVDSILLEFTETAID FTATDIPSSAATTAEENAPIVRLANLIVSEAVNMRASDIHIEPFEDKVRVRYRIDGVLVERDSPPKRLHSALISRFKIMG NMDIAEKRRPQDGRIKTRINGQDFDLRVSILPTGFGQAIVMRILDRNNIKVGIRSLGLSDENYRRFNNTIRRPNGIFLVT GPTGSGKTTTLYSALGEMNRPDKKIITAEDPVEYYLPGINQVEVKADIGLNFARIIRAMLRQAPNIILVGEIRDAETAQM AIQASLTGHLVFSTLHTNDAPSSITRLIDMGVEPFLVASSIVAIMAQRLVRTVCPKCKEPYAPDPSEIAHFALTPEQVAG ANFMRGKGCNHCQQSGYRGRAAVFELMMMNSTLREMTFKGEPSQSLRRQARLFGMKTLVEDAVDKALIGKSTLLEAYKLD KGSGH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-90 | 41 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 9e-91 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Plim_0410 | YP_003628459.1 | type II secretion system protein E | VFG1876 | Protein | 5e-90 | 45 |
| Plim_0410 | YP_003628459.1 | type II secretion system protein E | VFG0182 | Protein | 9e-99 | 44 |
| Plim_0410 | YP_003628459.1 | type II secretion system protein E | VFG2426 | Protein | 7e-72 | 43 |
| Plim_0410 | YP_003628459.1 | type II secretion system protein E | VFG2048 | Protein | 5e-92 | 42 |
