Gene Information

Name : Plim_3166 (Plim_3166)
Accession : YP_003631180.1
Strain : Planctomyces limnophilus DSM 3776
Genome accession: NC_014148
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4095845 - 4096567 bp
Length : 723 bp
Strand : -
Note : -

DNA sequence : 
GTGGTGGCTTCCCGGACAGATTGTGTCATCGTTGATCATGTCGCCAAATCGTTTCGTCGCGGAAGTGAAGAAGTTCATGT
GCTGGATGAACTCTCTTTGCGCGTCCCGGAAGGCGAGTTTCTGGCCTTAATGGGCCCCTCAGGCTCAGGCAAAACCACAC
TTCTCAACTTGATTGCCGGTCTGGATCGACCGACATCGGGCGAAGTGACAGTGCGTGGTGAGCCGATCTCCCGCCTCTCC
GAAGGCAAACTCGCCCTGTGGCGCACACGGAACATCGGCTTCGTGTTCCAGTTCTATCACCTGCTCCCTGTCCTCTCCGC
ATATCGCAATGTGGAGTTGCCACTTTTACTGCTCCCGATGACAGCCGCCCAGCGCCGGCAGCAGGTCGAAATGGCGCTGA
ACATTGTGAATCTCTCGGATCGTATGCATCATCGCCCCGGTCAACTTTCCGGCGGTCAACAGCAGCGCGTGGGAATTGCC
CGGGCGCTCGTTACCGATCCCGCCCTGATTGTGGCGGACGAACCGACGGGCGATCTCGACAGTAAAGCGGCCGACGAAAT
TCTTGCCTTACTCGTCGCTTTAAAAAGCTCGCTGAACAAAACCATTGTCATGGTGACCCACGACCCGAAAGCCGCTGCCC
GGGCCGATCGCACTTTACATCTCGAGAAGGGGAAACTCGTCGATGAAGTTTATGGAGCCCACACCTTTTCCGGTGTTCAT
TAA

Protein sequence : 
MVASRTDCVIVDHVAKSFRRGSEEVHVLDELSLRVPEGEFLALMGPSGSGKTTLLNLIAGLDRPTSGEVTVRGEPISRLS
EGKLALWRTRNIGFVFQFYHLLPVLSAYRNVELPLLLLPMTAAQRRQQVEMALNIVNLSDRMHHRPGQLSGGQQQRVGIA
RALVTDPALIVADEPTGDLDSKAADEILALLVALKSSLNKTIVMVTHDPKAAARADRTLHLEKGKLVDEVYGAHTFSGVH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-28 42
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 2e-25 41
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 6e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Plim_3166 YP_003631180.1 ABC transporter NC_012469.1.7686878. Protein 8e-48 50
Plim_3166 YP_003631180.1 ABC transporter CP001581.1.gene798.p Protein 1e-44 46
Plim_3166 YP_003631180.1 ABC transporter NC_008702.1.4606598. Protein 8e-40 46
Plim_3166 YP_003631180.1 ABC transporter CP001581.1.gene598.p Protein 1e-43 44