Gene Information

Name : Plim_0003 (Plim_0003)
Accession : YP_003628055.1
Strain : Planctomyces limnophilus DSM 3776
Genome accession: NC_014148
Putative virulence/resistance : Virulence
Product : response regulator receiver
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5023 - 5730 bp
Length : 708 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: swi:Swit_3444 two component transcriptional regulator

DNA sequence : 
ATGCGTGCCTTGATTGTTGAAGATCAGCCAGATCTGCTGTTTGCACTTCGAGGAATGCTGGAAGATGAAGGGTACGCCGT
AGATACGGCTGCCGATGGTGAATCGGGGCTGCATCGTGCACTTGTCTGGGAATACGATGTCATTGTGCTTGATTGGATGC
TCCCCCGGCTGTCCGGTTTTGATCTGCTGAAACAACTTCGCACGAAGAAATCAACACCCGTGCTCATGCTCACAGCCCGT
GATGGTGTGGCTGATCGAGTGCAAGGTCTCGATCAGGGGGCCGATGATTACCTCGTGAAGCCTTTTGATCGTGGCGAACT
TCTGGCCAGACTGCGGGCGTTAATCCGGCGGGCAGCCGGTGAATCCGAATCATTGCTCGAACTGGGTCAGGGAGTGACGA
TCAATCTCATTCATCGCAAAGTCTTCCGGGACGATGTCGAGATTGTGCTGACAGCTCGCGAATACTCGATTTTTGAATAT
CTGGCACTGCATAGGGGTCGTGTCGTTCCCCGTACCGATTTGTACGATCACATCTTCGATGAAAATGACGAATCTCTCTC
GAACCTGCTGGATGTGCATATCTCGAATCTCAGGCGGAAACTTGGCCGTGATGTGATTGAGACCCGTCGTGGCTTGGGGT
ACATCATTCATAGTCAGGCATCTTCTGCAGAACTGGTGGATGATGCATCCCACGATTCTGCTTCGTAA

Protein sequence : 
MRALIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALVWEYDVIVLDWMLPRLSGFDLLKQLRTKKSTPVLMLTAR
DGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRAAGESESLLELGQGVTINLIHRKVFRDDVEIVLTAREYSIFEY
LALHRGRVVPRTDLYDHIFDENDESLSNLLDVHISNLRRKLGRDVIETRRGLGYIIHSQASSAELVDDASHDSAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 9e-18 42
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-24 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Plim_0003 YP_003628055.1 response regulator receiver BAC0487 Protein 2e-24 46
Plim_0003 YP_003628055.1 response regulator receiver NC_002952.2859858.p0 Protein 2e-24 43
Plim_0003 YP_003628055.1 response regulator receiver NC_007622.3794948.p0 Protein 2e-24 43
Plim_0003 YP_003628055.1 response regulator receiver NC_003923.1003417.p0 Protein 2e-24 43
Plim_0003 YP_003628055.1 response regulator receiver NC_013450.8614146.p0 Protein 2e-24 43
Plim_0003 YP_003628055.1 response regulator receiver NC_002951.3238224.p0 Protein 2e-24 43
Plim_0003 YP_003628055.1 response regulator receiver NC_007793.3914065.p0 Protein 2e-24 43
Plim_0003 YP_003628055.1 response regulator receiver NC_002758.1121390.p0 Protein 2e-24 43
Plim_0003 YP_003628055.1 response regulator receiver NC_010079.5776364.p0 Protein 2e-24 43
Plim_0003 YP_003628055.1 response regulator receiver AE015929.1.gene1106. Protein 5e-20 42
Plim_0003 YP_003628055.1 response regulator receiver BAC0125 Protein 2e-29 42
Plim_0003 YP_003628055.1 response regulator receiver BAC0197 Protein 1e-27 42
Plim_0003 YP_003628055.1 response regulator receiver BAC0347 Protein 1e-23 41
Plim_0003 YP_003628055.1 response regulator receiver BAC0111 Protein 6e-25 41
Plim_0003 YP_003628055.1 response regulator receiver HE999704.1.gene1528. Protein 3e-21 41
Plim_0003 YP_003628055.1 response regulator receiver BAC0288 Protein 2e-24 41
Plim_0003 YP_003628055.1 response regulator receiver NC_002516.2.879194.p Protein 5e-26 41
Plim_0003 YP_003628055.1 response regulator receiver BAC0308 Protein 2e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Plim_0003 YP_003628055.1 response regulator receiver VFG0473 Protein 1e-28 45
Plim_0003 YP_003628055.1 response regulator receiver VFG0596 Protein 9e-25 41