Gene Information

Name : Plim_2517 (Plim_2517)
Accession : YP_003630542.1
Strain : Planctomyces limnophilus DSM 3776
Genome accession: NC_014148
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3276698 - 3277465 bp
Length : 768 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: hip:CGSHiEE_05325 outer membrane-specific lipoprotein transporter subunit LolE

DNA sequence : 
ATGTCCGATCCTGTTGTCGACGAATCTTGCGAGACAATCTTGCTCAGTTCAGCCATGCCACCTCATGCACAGCTTGTCGC
CACGGGGATCGATAAGGCTTACCGCAAGGGAGATCATCAGGTTCCTGTACTTCGCGGAGTCGATATCTCGATTGATCGCG
GAGAGTTTCTATCGATCGTGGGCCAATCGGGCTCAGGGAAAAGCACGCTACTGCATTTGATGGGGTTACTGGATGCCCCT
GATCTGGGTGAAGTGCTGCTTGATGGACAGCGGATTGATGATCTGCCAGCCCGCACCCGTGATCAGATTCGTAATCGCGT
CTTTGGCTTCGTGTTTCAGTTCTATCATCTGATGCCTGAACTGACGCTGGTGGAGAATGTGGTTCTGCCACTGATGATCC
GCCATTCGATCTGGTCGTATTGGAAGAACCGTCGATCGCATATTGACCGGGCCAAACAATTGATCGACCGCGTGGGGTTA
TCGCATCGATTGACGCATAAGCCTTCGGAGCTTTCCGGTGGTGAAATGCAGCGGGCAGCCATTGCCCGGGCACTCGTTTC
GCAACCTCAGATACTGCTTGCCGATGAGCCGACGGGCAACCTGGATGAAAAGACTGGTCGCGAAATTATGGATCTGCTCA
AACGGCTCAATACCGAAGAGCAGCTTTCGATTGTGATGGTGACCCACGATGCCCAGTTAGCGCGAGAAGCGACCCGAACT
GTGCGGCTGACTGCAGGTCGTGTAGAAGCACTGGCTGGAGCTGCCTGA

Protein sequence : 
MSDPVVDESCETILLSSAMPPHAQLVATGIDKAYRKGDHQVPVLRGVDISIDRGEFLSIVGQSGSGKSTLLHLMGLLDAP
DLGEVLLDGQRIDDLPARTRDQIRNRVFGFVFQFYHLMPELTLVENVVLPLMIRHSIWSYWKNRRSHIDRAKQLIDRVGL
SHRLTHKPSELSGGEMQRAAIARALVSQPQILLADEPTGNLDEKTGREIMDLLKRLNTEEQLSIVMVTHDAQLAREATRT
VRLTAGRVEALAGAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-35 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-35 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-35 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-35 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Plim_2517 YP_003630542.1 ABC transporter NC_008702.1.4606598. Protein 2e-35 46
Plim_2517 YP_003630542.1 ABC transporter NC_012469.1.7686878. Protein 6e-42 45
Plim_2517 YP_003630542.1 ABC transporter CP001581.1.gene598.p Protein 8e-39 42