Gene Information

Name : Plim_1994 (Plim_1994)
Accession : YP_003630023.1
Strain : Planctomyces limnophilus DSM 3776
Genome accession: NC_014148
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 2588863 - 2589651 bp
Length : 789 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: ATPase AAA; KEGG: rpe:RPE_2839 ABC transporter related

DNA sequence : 
ATGAATGCCGAGAATTCTCCACCAGATTCACCGCTTGTCATTCATGATATGACGGTGGCTTACGGCCGAAAGCCTGTCCT
CTGGAATATTGACTATGTCTCACCCAGTCGAAAACTGATCGCGATTGTTGGCCCCAATGGGGCTGGCAAAAGTACCCTAT
TGAAGGCGGCTTTGGGTTTGATCCCCCGGCAGAATGGAGAGGCTCTGTTTTTTGGCCAGCCTTATCAGGCAGTACGACAA
AAAGTGGCCTATGTTCCGCAGCGATCCAGTGTGGACTGGGATTTCCCGATCAGTGCCCTCGAAGTGGCGGCCATGGGCTG
TTACGGACGTATGGGGTGGTTTCGCCCAGTGAATCGCGATGCCAAAAATACGGCTTTGGCAGCTCTCGAACAGGTAGGTC
TGGGAGATGTGGCCAGACGTCAGATTGGTCAACTTTCTGGAGGCCAGCAGCAGCGGGTGTTTCTTGCCAGAGCTCTGGCT
CAGGATGCCGATCTTTATCTGATGGATGAGCCGTTTGCTGCCGTCGATGCCACGACAGAGCAATCGATTGTGTCCATGTT
GCAGGCATTGAGAGATCGAGGCAAGACGACGATTGTCGTGCATCACGATCTGCAGACGGTCTCGGAATACTTTGACGAAG
TGCTGTTGTTAAACTTGCGGCTGATTGCAGCGGGAGCGGTTTCTGAAGTGTTGACACCTCAAAATCTGAAGGCCACATAC
GGTGGTCAGCTTTCGATTCTGGATGCAGTGGGCCAGCGGATGTCAGCGAGACAATCCGTGACAAGTTAG

Protein sequence : 
MNAENSPPDSPLVIHDMTVAYGRKPVLWNIDYVSPSRKLIAIVGPNGAGKSTLLKAALGLIPRQNGEALFFGQPYQAVRQ
KVAYVPQRSSVDWDFPISALEVAAMGCYGRMGWFRPVNRDAKNTALAALEQVGLGDVARRQIGQLSGGQQQRVFLARALA
QDADLYLMDEPFAAVDATTEQSIVSMLQALRDRGKTTIVVHHDLQTVSEYFDEVLLLNLRLIAAGAVSEVLTPQNLKATY
GGQLSILDAVGQRMSARQSVTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 7e-41 44
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 6e-41 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Plim_1994 YP_003630023.1 ABC transporter BAC0400 Protein 3e-66 58
Plim_1994 YP_003630023.1 ABC transporter BAC0440 Protein 2e-45 43