Gene Information

Name : Plim_1774 (Plim_1774)
Accession : YP_003629803.1
Strain : Planctomyces limnophilus DSM 3776
Genome accession: NC_014148
Putative virulence/resistance : Resistance
Product : major facilitator superfamily protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 2296691 - 2297983 bp
Length : 1293 bp
Strand : +
Note : PFAM: major facilitator superfamily MFS_1; KEGG: rce:RC1_1688 tetracycline resistance protein, class C

DNA sequence :
ATGAGCTCTCCCACATTCAGAGAACTTCCACCTCAATCGCCTGAGAGCAAAGCCCACAAACAAGCAGGAATTCAGTTCAT
CCTCTGCACGCTTCTACTGGATGTTTTAGGGATTGGACTGATTATTCCGGTTCTACCAGATCTGGTGAAAATGCTGGCTG
GGAAGGACAATTCGGACGCTTCCCTGTGGTACGGCTCACTGATCACGGCCTATGCCACGATGCAGTTTCTGTTCGCGCCA
CTGATCGGTGCACTTTCAGATCGGTTCGGTCGCCGACCGGTGCTGCTGACGAGTATTGCAGTACTGACATTTGATTTTCT
GCTGACAGCTTTTGCGCCCAATCTCTGGTGGTTGCTTGTGGCTCGCATTCTTTCGGGCATGACCGCCGCCAACATTACAG
CGGCCAATGCCTATATTGCTGATATCAGTGACGAAACAACCCGCGTTCGCAATTTTGGTCTCGCCGGCGCCATGTTTGGT
CTTGGATTTGTACTGGGCCCACTCTTGGGAGGGATCGCCGGCAGCTACAGTTCGAGGCTACCGTTTCTGCTGGCTGCACT
GTTATCGGCCGTTAACTTTCTTTATGGCTGGTTGGTTTTGCCAGAATCATTACCCGCCGAGCAGCGTCACTGGCCACGCA
AATCGTCTTTCTTTCCGGGAACATCACTGCGATCACTGCGCGTCGAGCCTGTGGTTTTTGGACTGGCGATCGCCTATTTC
TGTGTCAGTTTTGGAGAAATGACCCTACGTTCGACGTGGATTCTCTTTACCGAAGAACGATTTCAATGGGATGCCTTTCA
GAATGGACTGGCCCTTTCGATGGTGGGCCTGATGACGGCTTTTGTTCAGGCAGTGCTGGTTCGGAGATTTAACAACCGGT
TTGGAGAACGGGCAGCTCTGCTCACTGGACTTTTCATTTCCATGCTGGCGTATATCGGCTATGCACTGGCAACCCGCGGC
GAGATGATGTTCGCGATCATCATGCTCAGTTCGCTGGGTGGCATATCCGGGCCAACGGCTCAATCGATTATTGCCAAACG
CGTTGATCCGAAAACTCAAGGACAAGTGCAGGGGGCGCTCTCGAGCATTGCCAGCCTGACCGCCATCCTCGCACCATCAC
TGGGGACAGGAGCCTTCTGGTACTTCACCCATGAGCCGCAAAAGCTCTACTTCCCGGGAATCCCTTTCGTGATCGCTGCG
ATCTTCGCATTCCTGGCTCTGCTGATTACTGCCTGGGTCACACAGTCAATCTCGACATCTCAGAAAGCGATAGACCCGAT
CCATCAGACGTAA

Protein sequence :
MSSPTFRELPPQSPESKAHKQAGIQFILCTLLLDVLGIGLIIPVLPDLVKMLAGKDNSDASLWYGSLITAYATMQFLFAP
LIGALSDRFGRRPVLLTSIAVLTFDFLLTAFAPNLWWLLVARILSGMTAANITAANAYIADISDETTRVRNFGLAGAMFG
LGFVLGPLLGGIAGSYSSRLPFLLAALLSAVNFLYGWLVLPESLPAEQRHWPRKSSFFPGTSLRSLRVEPVVFGLAIAYF
CVSFGEMTLRSTWILFTEERFQWDAFQNGLALSMVGLMTAFVQAVLVRRFNNRFGERAALLTGLFISMLAYIGYALATRG
EMMFAIIMLSSLGGISGPTAQSIIAKRVDPKTQGQVQGALSSIASLTAILAPSLGTGAFWYFTHEPQKLYFPGIPFVIAA
IFAFLALLITAWVTQSISTSQKAIDPIHQT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 3e-37 43
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 2e-37 43
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 2e-37 43
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 2e-37 43
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 3e-37 43
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 2e-37 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Plim_1774 YP_003629803.1 major facilitator superfamily protein NC_011586.7045189.p0 Protein 1e-37 43
Plim_1774 YP_003629803.1 major facilitator superfamily protein Y19114.gene.p01 Protein 8e-37 43
Plim_1774 YP_003629803.1 major facilitator superfamily protein X75761.gene.p01 Protein 4e-37 43
Plim_1774 YP_003629803.1 major facilitator superfamily protein NC_010410.6002597.p0 Protein 1e-37 43
Plim_1774 YP_003629803.1 major facilitator superfamily protein CP001485.1.gene2821. Protein 1e-37 43
Plim_1774 YP_003629803.1 major facilitator superfamily protein AF534183.gene.p01 Protein 1e-37 43
Plim_1774 YP_003629803.1 major facilitator superfamily protein AY264780.2.gene3.p01 Protein 7e-36 42