Gene Information

Name : afeD (MCR_1870)
Accession : YP_003628019.1
Strain : Moraxella catarrhalis RH4
Genome accession: NC_014147
Putative virulence/resistance : Virulence
Product : chelated iron ABC transporter permease AfeD
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1833016 - 1833858 bp
Length : 843 bp
Strand : +
Note : -

DNA sequence : 
ATGTCAAATTCTATTTTATACTGGTTCACCGAGCCTTTTAGTCATACCTTTATGCAACATGCCCTCATCTCAGCGGTGGC
GGTGGCGGTTATTTGTGCACTTTTATCCTGCTACATTGTGTTAAAGGGATGGTCTTTGATGGGAGATGCCATCTCGCATG
CAATTTTTCCAGGGGTGGTGGTCGCTTTTTGGCTGGGCATTCCGATGACTTTTGGAGCATTTATTGCCGGAGTATGTTGT
GCTGGTGCCGTAGGCTATTTACAAACTCACACCCGACTTAAAGAAGATACGCTGATGGGCGTGGTATTTTCAGGTATGTT
TGCATTAGGGCTTGTGATATTTCATAAGATTGACAGTGGTCAACACTTGACACATCTTTTATTTGGCAACCTTTTGGGCA
TCAGTCGCACCCTGATGTACCAAACTTTAGGTGTTTCAGCAATCATCTTTTTGATACTCATTTTAAAAAGACGCGACCTT
TTGTTGTATTGTTTTGACAGCCATCATGCCCAAGTTGCAGGTTTATCGATACAAAAACTACACTATGGCTTATTGATTAT
ATTGTCAGCAACCATTGTGGTTGCTATGCAAGCGGTTGGGGTGATTTTGGTGATTGCTATGCTCATTTCACCTGGCATGA
CTGCTTTTATTTTATGCAAACGCTTTGATACAATGTTGCTGACTGCCATCATTAGCTCATGTTTTACAAGTGTATTCGGG
GTAATTATCAGTTATCATCTAGATTCTGCGACAGGTGCGACGATTGTACTGATGCAAGCTTTGGTATTTTTGGGTGCAAT
GATTTATGACAAAATTTGCTTATGGCTTTTAAACTTTTATTAA

Protein sequence : 
MSNSILYWFTEPFSHTFMQHALISAVAVAVICALLSCYIVLKGWSLMGDAISHAIFPGVVVAFWLGIPMTFGAFIAGVCC
AGAVGYLQTHTRLKEDTLMGVVFSGMFALGLVIFHKIDSGQHLTHLLFGNLLGISRTLMYQTLGVSAIIFLILILKRRDL
LLYCFDSHHAQVAGLSIQKLHYGLLIILSATIVVAMQAVGVILVIAMLISPGMTAFILCKRFDTMLLTAIISSCFTSVFG
VIISYHLDSATGATIVLMQALVFLGAMIYDKICLWLLNFY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-51 52
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-51 52
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-51 51
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-51 51
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-51 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
afeD YP_003628019.1 chelated iron ABC transporter permease AfeD BAC0442 Protein 2e-70 59
afeD YP_003628019.1 chelated iron ABC transporter permease AfeD BAC0352 Protein 6e-52 52
afeD YP_003628019.1 chelated iron ABC transporter permease AfeD BAC0441 Protein 4e-34 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
afeD YP_003628019.1 chelated iron ABC transporter permease AfeD VFG0528 Protein 6e-52 52