Gene Information

Name : afeC (MCR_1869)
Accession : YP_003628018.1
Strain : Moraxella catarrhalis RH4
Genome accession: NC_014147
Putative virulence/resistance : Virulence
Product : chelated iron ABC transporter permease AfeC
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 1832137 - 1832979 bp
Length : 843 bp
Strand : +
Note : -

DNA sequence : 
ATGATTGCATTACTACTTGAGCCTTTTGCTTATGAATATATGCTCAAGGCAATTTTTTTAAGCTCATTAGTAGGCGGTGT
TTGTGCCTTTTTATCAGCCTATCTGATGCTAAAAGGCTGGTCTTTAATCGGTGATGCCTTATCACATGCTGTGGTGCCTG
GTGTTGCAATTGCCTATGCACTGGGTGCACCTTATGCGTTGGGTGCGTTTTTTTCTGGCATTTTAGCGGCCTTATCTATT
TTATGGATTAAGTCTGTGACCAAACTGCGTGAAGATGCTGTCATTGGATTTATTTTTACGACTTTTTTTGCCTTAGGCTT
ATTTATCATTTCTTTAAACCCCACCGCTATCAATGTTCAAGAAATTATTTTTGGCAACATATTGGGCATTGCCAATACAG
ATATGTATCAAGTGACTGTTGTTATGGTCATTACTTTGTTGATTTTATTAATATTTTGGAAAGATTTGCTGTTGGTTTTT
TTTGATGAAATACAAGCCAAAGCGGTGGGTTTATCAAGCAAATATTATAAATTATTATTTTTTAGCCTACTTAGTGCCTG
TGTCGTCTCTGCACTACAAACCGTTGGTGCAATCTTGGTCATTGCTATGGTGATCACACCTGGAGCAACTGCTTATCAGC
TCACTGATAAATTTCGTACACTGATTTTAATTGCTGGCGCTATTGGCGTCATCACTGGCGGATTTGGCGTATACTTAAGT
TATTTTTTAGATGGTGCAACTGGAGGGATTATTGTCTGCCTACAAACAGCACTATTTATCATCGCTTTTTTGTTTTCACC
TAAGTACGGTAAGTTAAAACAGCCAAAATTTCAGTCTCCCTAA

Protein sequence : 
MIALLLEPFAYEYMLKAIFLSSLVGGVCAFLSAYLMLKGWSLIGDALSHAVVPGVAIAYALGAPYALGAFFSGILAALSI
LWIKSVTKLREDAVIGFIFTTFFALGLFIISLNPTAINVQEIIFGNILGIANTDMYQVTVVMVITLLILLIFWKDLLLVF
FDEIQAKAVGLSSKYYKLLFFSLLSACVVSALQTVGAILVIAMVITPGATAYQLTDKFRTLILIAGAIGVITGGFGVYLS
YFLDGATGGIIVCLQTALFIIAFLFSPKYGKLKQPKFQSP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 8e-62 59
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 7e-62 59
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-62 59
sitC NP_461784.1 permease Virulence SPI-1 Protein 9e-62 59
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 8e-62 59

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
afeC YP_003628018.1 chelated iron ABC transporter permease AfeC BAC0441 Protein 6e-68 66
afeC YP_003628018.1 chelated iron ABC transporter permease AfeC BAC0351 Protein 4e-62 59
afeC YP_003628018.1 chelated iron ABC transporter permease AfeC BAC0442 Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
afeC YP_003628018.1 chelated iron ABC transporter permease AfeC VFG0527 Protein 4e-62 59