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Name : hsdR1 (THI_0615) Accession : YP_003623201.1 Strain : Thiomonas sp. 3As Genome accession: NC_014145 Putative virulence/resistance : Unknown Product : Type I site-specific deoxyribonuclease HsdR Function : - COG functional category : - COG ID : - EC number : 3.1.21.3 Position : 618341 - 621550 bp Length : 3210 bp Strand : + Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 8921897; Product type e : enzyme DNA sequence : ATGACGAGCGCAGTCCTTGAAGACCACCTCGAACAAGCCACGCTTCAGTGGCTCTCCGCGCTCGGCTGGCAAACCGCGCA TGGCCCTGACATCTCACCGCCCGACGCCAGGACCGCTGGCACCGAGCGCGACACCTACCGCCAGGTCTGCCTACCCCATC GCCTTGCGGCCACGATTCAGCGCCTGAATCCCAACATCCCGACGAGCGCACGGGACGCGGCTCTGCGCCTAGTCCTCAAC CCCAACACCCCCGGCCTCGTCGCCGCCAACCGCCAGTTCCACCGCTGGCTGGTCGAAGGTGTCCCGGTCGAGTACCAGAG GGACGGCGAAACCCGCGGCGACCGCGTCCGGCTCATCGACTTCAGCGACGTTGGCCGAAACGACTGGCTGGCCGTCAACC AGTTCACCGTGCAAGGCCCCAAGCACACCCGCCGCCCCGACCTCGTGCTGTTCCTCAACGGCCTGCCCCTGGTGGTGCTG GAACTCAAGAACCCCGGCGACGAGAACGCCGACATCTGGGGCGCCTTCAACCAGCTCCAGGCCTACAAAGACGACATTCC CGACCTGTTCATCGACAACGAGCTGCTGGTCATCACCGACGGCATCTCCGCCCGCATGGGCTCGCTCACCGCCGACCGGG AACGCTTCATGGCCTGGCGCACCATCGACGGCCACACCACCGACCCGCTCGGGTCCATGCGCGAACTGGAAACCCTGGTC CAAGGTGCCTTCGACCGCCAGACCCTGCTCGACTATCTGCAGCACTTCATCCTGTTCGAGGACGATGGGGGGCTGGTCAA GAAGGTCGCCGGCTACCACCAGTTCCATGCCGTGCGCGCCGTGGTCGACAGCGTGCTCAAGGCCAGCGCCCCTGGCGGCT CGCGCAAGGGCGGGGTGGTGTGGCACACCCAGGGGGCTGGCAAGAGCATCGAGATGACCTGCCTGGCCGGCATGCTCATC GGGCACCCGGAGCTCCAGAACCCCACGGTCTTGATGGTCACCGACCGCAACGACCTGGACAACCAACTGTTCGGCGTGTT CGCCGGCGCCACCGAGCTGCTGCACGAAACCCCGGTGCAGGCCGCCACCCGCCCCAAGCTGCGCGAGCTGCTGGGCAACC GCCCCAGCGGCGGCATCGTCTTCACCACCATCCAGAAGTTCGCACCTGGCGAGGACGAAGACAGCTTCCCGGTGCTGTCC GAGCGCAGCAACATCATCGTCATCTGCGACGAAGCCCACCGCAGCCAGTACGGCTTTGCCGCCAAGCTGCCCGGACAGGA CGATGCCACCCGTCGCTACCGCCAGACCGCGGCCGCGCCGCTGAGCGCGCAGGATGCCGGCGCGATTGGGGCCACCACGG CCTTGGTCACAGCGGCCCCGGCCTCCAGCGTGCGCTACGGCTACGCCCAGTACCTGCGCGACGCGTTGCCCAACGCCACC TTCGTCGCCTTCACCGGCACCCCCGTGTCGCTGGAGGACCGCGACACCCGCGCCGTGTTCGGCGACTACGTCCACATCTA CGACGTCGAGCAGGCGGTCAAGGACGGCGCCACGGTGCCCATCTATTACGAGTCGCGCCTGGCGAAGCTCGAACTCGCGG AGGAGGACACCACCTGGCTTGATGATGACGTCGACCAATTGACCGAGGACGATGAGGACGACGCCAGCAAGACCAGCAAG CTGCGCCGCTGGGCCGCGCTGGAAAAACTCGTTGGCGCACCGCCCCGGATTCAGAAGGTGGCCGCCGACATCGTCGAACA CTTCGAAAACCGCCTTGCCGCCCTGGACGGTAAGGCCATGGTCGTCGGCATGAGCCGCGAGATTTGCGTCCATCTCTACG ACGCTCTCGTCGCCCTGCGGCCGGAATGGCACGACCCCGACCCCGACAAAGGCGCCATCAAAATCATCATGACCGGCTCG GCCTCGGACAAGCCGATGCTCAAGCCGCACATCTACACCAAAGAGGTCAAGAAGCGCCTGGAGCGGCGCTACAAGGACCC TGCCGACCCGTTCAAGCTGGTCATCGTGCGCGACATGTGGCTGACCGGCTTCGATGCGCCCTGTCTGCACACGATGTATA TCGACAAGCCCATGCGTGGCCACAACCTGATGCAGGCCATCGCCCGGGTCAACCGGGTGTTCAAGGACAAGCCCGGCGGT CTGGTCGTCGACTACATCGGCATTGCCAACGAGCTCAAGGCCGCCCTGAAGGACTACACCCTGGCCCACGGCAAGGGGCG GCCGACCATCGACACCCACGAGGCCCTGCGCTTGCTGCTGGAGAAGATGGAGGTGCTCCACGGCATCCTGCACGGCTGCG ACTACGCGGACTTCCGCACCCAAGCCTGGCAACTGCTGCCCAAGGTGGCCAACCATATCCTGGGCCAGGATGACGGCAAG AAGCGCTTCGCCGACGCCGTCCTGTCCGCCACCAAGGCGTTCGCGCTGTGCTGCACGCTTGACGAGGCTCTTGAACACCG GGACGAACTGGCCTTCCTGCAGGCCACCAAGGCTGCCCTGACCAAGCACACCACACAGGACAAGAAGCTCAGCGACGAGC AGAAAGAACACGCGCTGCGGCAGATTCTGAGCAAGGCCGTGGTCAGCGCCGAGGTCGTCGACATCTTCCAGGCGGCCGGG TTGAACAAACCGGATATCGGCATTCTGTCCGAGGAGTTCCTCGACGACGTGCGGCACATGAAGGAGCGCAATCTGGCGGT GGAGCTGCTGGAGCGCCTGCTCAAGGATGACATCAAGACCCGATTCAAGACCAATGTGGTCAAGGCGGCCAAGTACAGCG AATTGCTTCAGGAAAGCCTCAAGCGCTACCGCAACCGCGCCATCGAGACGGCCCAGGTCATCGAGGAACTGATTGCGATG GCCAAGCAGTTCCAGCAGGAGGCCATCAGGGGCGCCGCGCTGGGGCTGAGTCCCGAGGAGCGGGCGTTCTACGACGCGCT GGCCGCCAATGAGTCGGCGGTCAGAGAACTGGGCGACGAGACGCTGAAGAAGATTGCGGTCGAGCTGACGCTGAAACTGC GTAACTCTGTAACCGTCGATTGGTCCGTGCGCGACGCGGTGCGGGCAAGCATTCGGGTGATGGTCAAGACGCTGTTACGG CGTTACAAGTATCCGCCGGACAAGCAGGAGGAGGCAACCGAGACGGTGCTCAAGCAGGCGGAGATGCTGTCGGCGGAATG GGTAGGGTGA Protein sequence : MTSAVLEDHLEQATLQWLSALGWQTAHGPDISPPDARTAGTERDTYRQVCLPHRLAATIQRLNPNIPTSARDAALRLVLN PNTPGLVAANRQFHRWLVEGVPVEYQRDGETRGDRVRLIDFSDVGRNDWLAVNQFTVQGPKHTRRPDLVLFLNGLPLVVL ELKNPGDENADIWGAFNQLQAYKDDIPDLFIDNELLVITDGISARMGSLTADRERFMAWRTIDGHTTDPLGSMRELETLV QGAFDRQTLLDYLQHFILFEDDGGLVKKVAGYHQFHAVRAVVDSVLKASAPGGSRKGGVVWHTQGAGKSIEMTCLAGMLI GHPELQNPTVLMVTDRNDLDNQLFGVFAGATELLHETPVQAATRPKLRELLGNRPSGGIVFTTIQKFAPGEDEDSFPVLS ERSNIIVICDEAHRSQYGFAAKLPGQDDATRRYRQTAAAPLSAQDAGAIGATTALVTAAPASSVRYGYAQYLRDALPNAT FVAFTGTPVSLEDRDTRAVFGDYVHIYDVEQAVKDGATVPIYYESRLAKLELAEEDTTWLDDDVDQLTEDDEDDASKTSK LRRWAALEKLVGAPPRIQKVAADIVEHFENRLAALDGKAMVVGMSREICVHLYDALVALRPEWHDPDPDKGAIKIIMTGS ASDKPMLKPHIYTKEVKKRLERRYKDPADPFKLVIVRDMWLTGFDAPCLHTMYIDKPMRGHNLMQAIARVNRVFKDKPGG LVVDYIGIANELKAALKDYTLAHGKGRPTIDTHEALRLLLEKMEVLHGILHGCDYADFRTQAWQLLPKVANHILGQDDGK KRFADAVLSATKAFALCCTLDEALEHRDELAFLQATKAALTKHTTQDKKLSDEQKEHALRQILSKAVVSAEVVDIFQAAG LNKPDIGILSEEFLDDVRHMKERNLAVELLERLLKDDIKTRFKTNVVKAAKYSELLQESLKRYRNRAIETAQVIEELIAM AKQFQQEAIRGAALGLSPEERAFYDALAANESAVRELGDETLKKIAVELTLKLRNSVTVDWSVRDAVRASIRVMVKTLLR RYKYPPDKQEEATETVLKQAEMLSAEWVG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 56 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 46 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 45 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 45 |
