Gene Information

Name : vipB (THI_1625)
Accession : YP_003624137.1
Strain : Thiomonas sp. 3As
Genome accession: NC_014145
Putative virulence/resistance : Virulence
Product : Vi polysaccharide biosynthesis protein; putative UDP-glucose 4-epimerase
Function : -
COG functional category : -
COG ID : -
EC number : 5.1.3.2
Position : 1615634 - 1616647 bp
Length : 1014 bp
Strand : +
Note : Evidence 2b : Function of strongly homologous gene; PubMedId : 8248629, 8331073; Product type pe : putative enzyme

DNA sequence : 
ATGTCGATCGAGCAAATGCTGTCTTCGAAGCCCCAGCGCTGGCTGGTGACGGGGAGCGCCGGATTCATCGGCTCTCACCT
GATCCAAACGCTTCTGACCCATGGCCAGGACGTGGTCAGTCTGGACAATTTTTCAACCGGCCATCAATCCAATCTGGATG
AAGTGCGGCGCCTCGTTGGCGAAGAGGCCTGGAAGCGGCACACCTTCATCGAGGGTGACATTGTCGATCCGCAGACTTGC
CAGCGGGCTTGTCAGGGCGTCAACATCGTGTTGCATGAGGCGGCTTTGGGATCTGTGCCGCGCTCGATTGAAAACCCGCT
GGCAACGCACGCGGTCAACGCCACGGGTTTTCTGAACATGCTGGTCGCCGCGCGCGACGCGGGCGTGGGTCGCTTCGTTT
ATGCGGCGTCCAGCTCCACCTATGGCGATCACCCGGGCTTGCCCAAGGTCGAAGACCTCATCGGCAAGCCGCTGTCGCCC
TATGCGGTGACCAAATATCTCAACGAACTCTACGCAGACGTATTCGGCCGGGTCTATGGCTTGCAGAGCATCGGACTGCG
CTATTTCAACGTGTTCGGCACCCGCCAGGACCCCAATGGGCCTTATGCGGCGGTGATTCCCAATTGGGCCAAAGCCATCC
GCGGCAATCAGCCTTGTTTCATCAATGGCGACGGCGAAACCACGCGCGACTTCTGCTATATCGACAACGTGGTGCAGGCC
AATGTGCTGGCAGGGCTGAGTACGCATCCTGAATCGGCGAATCAGGTCTACAACGTGGCGTTTGGCGAGCAGACAAGCCT
GAACACCCTTCACCAGTTGTTGAGCGAGGAAATCATGGCGCTCGACACTAGCGTGAAATTCACCCCGCCGGTTTACCGCG
ACTTTCGCAAGGGTGACGTGCGGCATTCCCTTGCCGACATCAGCAAGGCCAAACGCCTGTTGGGCTACAGCCCCGATTTC
AGCGTGCGCGCGGGCTTGAAAATCGCCATGCCGTGGTACGTTGCCAAGTCGTAA

Protein sequence : 
MSIEQMLSSKPQRWLVTGSAGFIGSHLIQTLLTHGQDVVSLDNFSTGHQSNLDEVRRLVGEEAWKRHTFIEGDIVDPQTC
QRACQGVNIVLHEAALGSVPRSIENPLATHAVNATGFLNMLVAARDAGVGRFVYAASSSTYGDHPGLPKVEDLIGKPLSP
YAVTKYLNELYADVFGRVYGLQSIGLRYFNVFGTRQDPNGPYAAVIPNWAKAIRGNQPCFINGDGETTRDFCYIDNVVQA
NVLAGLSTHPESANQVYNVAFGEQTSLNTLHQLLSEEIMALDTSVKFTPPVYRDFRKGDVRHSLADISKAKRLLGYSPDF
SVRAGLKIAMPWYVAKS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 1e-97 59
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 1e-97 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
vipB YP_003624137.1 Vi polysaccharide biosynthesis protein; putative UDP-glucose 4-epimerase VFG0430 Protein 6e-98 59