Gene Information

Name : trwdD (THI_p0048)
Accession : YP_003622615.1
Strain :
Genome accession: NC_014144
Putative virulence/resistance : Virulence
Product : Type IV secretory pathway, VirB11 component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 31347 - 32381 bp
Length : 1035 bp
Strand : -
Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 3281947; Product type t : transporter

DNA sequence : 
ATGCACACTAGCCCGCATGAAGTGGTGGAACTCAGGCGTTCGTCATCGGCGCACGCGCCGATGCTGCATGAGTTCCTGAC
GCCGTTTCGCGCGTATTTGGCCGATGATGCGGTGGATGAGGTGTGCATCAATCAACCGGGCTCGATCTGGACAGAAGGCA
CGCGCGGCTGGGAGCGGCACGCGCAGCCCGCGTTGACGTTCGATGCGTGCAAGCATCTGGTGAATCTGATCGCGGGCTAT
AACGGCAAGAGCTTGAAAGACAGGCCGGTTCTTTCGGCGTCGCTGCCCAGCGGTGAGCGGGTGCAGGCGGTGATTCCGCC
CGGCTGCGAGCCCGGCGCAGTGAGCATCACAATCCGCAAAGCCTCGCGCATCAGCAGAAGCCTGGAGCAGTTGGAGGATG
ACGGCACCTTTTCGGATGTGGTGGTCAAGCGCGACACCCTGCAAGACTTCGAGCGGGAATTGCTCGATCTGCTGGCCCAG
CGCCGCTACCGGGAGTTTTTGCACCTGGCGGTGGTTAGCAAGCGCAACATCGTCATCGCAGGCAAAACAGGTTCGGGCAA
GACCACACTCACCAAGAGCTTGATTGACCGCATCCAGCCGACCGCGCGGCTGATTACGCTGGAGGATGTCCACGAGCTGC
CGCTGCCGAACCATCCCAACCATGTGCATCTGTTCTACAGCCGGGAGGTCGAAACGCATAGCGTGTTGTCAGCGAAAGAC
GCGCTTGCGTCCTGCCTGCGCATGAAGCCCGACCGGATTTTGCTGGCCGAGCTGCGCGGTGATGAAGCCTGGGAATATGT
CAAGGCGGTGAACACTGGACATCCGGGGTCGATCACTTCGCTGCACGCTAACGGCGCGTATGAATCCTTCGAGCAGATGA
CGGCCTTCATCAAGGATTCTCCGACCGGCGCGCACCTGCCCGCCGACTACATTCAAAAGCGGTTGTTCGCCACGATTGAT
GTGGTCATCTTCATGCACAACCGCAAAGTGGTTGAGGTGTTTTATGACCCGGAAAGCCGCCATGTCAACGTCTGA

Protein sequence : 
MHTSPHEVVELRRSSSAHAPMLHEFLTPFRAYLADDAVDEVCINQPGSIWTEGTRGWERHAQPALTFDACKHLVNLIAGY
NGKSLKDRPVLSASLPSGERVQAVIPPGCEPGAVSITIRKASRISRSLEQLEDDGTFSDVVVKRDTLQDFERELLDLLAQ
RRYREFLHLAVVSKRNIVIAGKTGSGKTTLTKSLIDRIQPTARLITLEDVHELPLPNHPNHVHLFYSREVETHSVLSAKD
ALASCLRMKPDRILLAELRGDEAWEYVKAVNTGHPGSITSLHANGAYESFEQMTAFIKDSPTGAHLPADYIQKRLFATID
VVIFMHNRKVVEVFYDPESRHVNV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
trwD CAD42862.1 TrwD protein Not tested trw-PAI Protein 1e-52 43
trwD YP_001610494.1 TrwD protein Virulence Not named Protein 1e-52 43
virB11 YP_001610007.1 VirB11 protein Virulence Not named Protein 4e-51 42
vblB11 YP_001610351.1 VblB11 protein Virulence Not named Protein 2e-51 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
trwdD YP_003622615.1 Type IV secretory pathway, VirB11 component VFG2218 Protein 1e-51 45
trwdD YP_003622615.1 Type IV secretory pathway, VirB11 component VFG2269 Protein 2e-54 42
trwdD YP_003622615.1 Type IV secretory pathway, VirB11 component VFG2240 Protein 5e-49 42