Gene Information

Name : BC1002_6951 (BC1002_6951)
Accession : YP_003610258.1
Strain :
Genome accession: NC_014120
Putative virulence/resistance : Unknown
Product : Integrase catalytic region
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 185512 - 186540 bp
Length : 1029 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: bcj:BCAS0653 transposase

DNA sequence :
ATGCTCCAGAAGGAACAGTGGATGCAAATCCATGTGCTCAAAGCCCAAGGGTTGTCGTTGCGAGAGATCGCGCGGCACTT
GGGCGTATCTCGCAACACCGTGACCCGTTACCTGGCGTCGCAGGACGTACCTCGCTATAAGCAGCGTGAGCCGCGGCCCA
CCAAGCTCGATCCATGTCAGGCATACATTGTCGAGAGGATGCAAGCGGCGGCGCCGGACACGATTGCGGCGCCAGCACCG
CTGCGCGAGCTTCGCGCGCGTGGCTACGAAGGAAAACTTCGCAGTATCCAAGCCTTCATGAAGGCACATAAGCCCGCGCC
GGCGCCCGATCCGATCGTACGCTTCGAGACGGAGCCTGGTCGGCAGATGCAATGCGACTTCGTCGTATTCCGTCGCGGCG
CTGACCCGCTATACGCGTTCACTGCCACGCTCGGTTTTAGCCGCTGGCGCTGGGCGCGCTTTGCGACCAACGAGAAGGCC
GAAACGCTGATCGCTTGCCATCACGCATTATTCGAAACGCTCGGCGGAGTGCCTCGCGAGATTCTGTACGACAACGCCAA
GACGATCGTGCTCGAGCGTGATGCCTATGGCAAAGGCGAGCATCGGTGGCATCCGGGGCTGCTCGATCTAGCGAAGCGCT
ACGGGTTCATGCCCAGGCTTTGCCAACCGTATCGCGCACGCACGAAGGGCAAGATCGAGCGCTTCCATCGCTATCTTCGC
GGCAACCTCTACGTGCCGTTGTCCAGTTGGCTCGAGCAGTCCGGCATGCTGCTCGATGTGGAAACGGCCAACGCCGAAGT
GGGCAAGTGGCTGCGCGATGTTGCCAACCAGCGAGTTCATCTGGTTACGGGAGCGACGCCGGCAAGCCTGTTCGAAGAAC
GCGAGCGGGACACGCTGCGCAAGCTGCCCGCATTCGCAACGCCACTACCCGTGATATCGCCGGCCGTAAGGCCGACGACA
CCTTCATCGTTCTCGCTGCAGCACCCCTTGTCGGTCTATCAGCAATTGCTGACAGAGGTGCGGGCATGA

Protein sequence :
MLQKEQWMQIHVLKAQGLSLREIARHLGVSRNTVTRYLASQDVPRYKQREPRPTKLDPCQAYIVERMQAAAPDTIAAPAP
LRELRARGYEGKLRSIQAFMKAHKPAPAPDPIVRFETEPGRQMQCDFVVFRRGADPLYAFTATLGFSRWRWARFATNEKA
ETLIACHHALFETLGGVPREILYDNAKTIVLERDAYGKGEHRWHPGLLDLAKRYGFMPRLCQPYRARTKGKIERFHRYLR
GNLYVPLSSWLEQSGMLLDVETANAEVGKWLRDVANQRVHLVTGATPASLFEERERDTLRKLPAFATPLPVISPAVRPTT
PSSFSLQHPLSVYQQLLTEVRA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y2411 NP_669718.1 transposase Not tested HPI Protein 3e-56 49
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 3e-56 49
unnamed CAA21403.1 - Not tested HPI Protein 3e-56 49
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 2e-56 49
api83 CAF28557.1 transposase Not tested YAPI Protein 2e-56 49
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 3e-56 49
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 2e-57 45
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 2e-57 45
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 3e-57 45
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 2e-57 45
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 2e-57 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1002_6951 YP_003610258.1 Integrase catalytic region VFG1607 Protein 1e-57 45
BC1002_6951 YP_003610258.1 Integrase catalytic region VFG1461 Protein 1e-57 45
BC1002_6951 YP_003610258.1 Integrase catalytic region VFG1514 Protein 1e-57 45
BC1002_6951 YP_003610258.1 Integrase catalytic region VFG1626 Protein 1e-57 45