Gene Information

Name : BC1002_3142 (BC1002_3142)
Accession : YP_003606698.1
Strain :
Genome accession: NC_014117
Putative virulence/resistance : Virulence
Product : Lytic transglycosylase catalytic
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 3475813 - 3476256 bp
Length : 444 bp
Strand : -
Note : PFAM: Lytic transglycosylase catalytic; KEGG: bxe:Bxe_A4502 hypothetical protein

DNA sequence : 
ATGAAACGTCCGCTCGTCACCGTTGCCGCCACGCTCGCGCTGCTCGCCGCGGCCGGCTCCGCGCGCGCCGACTGCTTCGA
TGAAGCGGCGAAGTATCAGAAGGTCAATCCGCTGATCTTACGGGCTATCGCGTGGCAGGAGTCGCACAACCGGCCGGATG
CGCAGCACAAGAACGCGAACGGCTCGACCGACTATGGCGTGATGCAGATCAATTCGGTGCATCTGCCGGTGCTCGCCCAG
TACGGGATCTCGCAGGGCACGCTGATGGAGCCGTGCAAGAACGTTTATATCGCGGCGTGGCATCTGCGCCGCCAGATGAA
CAAGTACGGCAATACCTGGCAGGCGGTCGGAGCATACCACTCGGAGACGCCTACGCTGCGGGACAAATACGCGCAGCAAA
TCGCCGCAATCCTGCGCAGCTGGAAGTTGATGCCCGCGCAGTAA

Protein sequence : 
MKRPLVTVAATLALLAAAGSARADCFDEAAKYQKVNPLILRAIAWQESHNRPDAQHKNANGSTDYGVMQINSVHLPVLAQ
YGISQGTLMEPCKNVYIAAWHLRRQMNKYGNTWQAVGAYHSETPTLRDKYAQQIAAILRSWKLMPAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hpa2 NP_640772.1 Hpa2 protein Virulence Hrp PAI Protein 3e-35 69
XC_3001 YP_244069.1 Hpa2 protein Virulence Hrp PAI Protein 4e-35 69
hpa2 NP_636615.1 Hpa2 protein Virulence Hrp PAI Protein 4e-35 69
hpaH YP_362172.1 transglycosylase HpaH Virulence Hrp PAI Protein 1e-35 69
hpaH AAL78295.1 HpaH precursor Virulence Hrp PAI Protein 1e-35 69
hpa2 AAF61278.1 Hpa2 precursor Virulence Hrp PAI Protein 5e-35 69
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 2e-12 43
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 2e-12 43
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 2e-12 43
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 2e-12 43
unnamed AAC38373.1 rOrf3 Not tested LEE Protein 2e-16 42
ECO103_3629 YP_003223486.1 hypothetical protein Not tested LEE Protein 3e-17 42
ECO26_5260 YP_003232142.1 hypothetical protein Not tested LEE Protein 3e-17 42
unnamed AAK26704.1 unknown Not tested LEE Protein 2e-17 42
unnamed AAL57531.1 unknown Not tested LEE Protein 2e-17 42
st13 CAC81851.1 ST13 protein Not tested LEE II Protein 2e-17 42
unnamed CAI43885.1 hypothetical protein Not tested LEE Protein 2e-17 42
unnamed AAL06358.1 unknown Not tested LEE Protein 9e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1002_3142 YP_003606698.1 Lytic transglycosylase catalytic VFG0994 Protein 1e-10 43
BC1002_3142 YP_003606698.1 Lytic transglycosylase catalytic VFG0539 Protein 5e-13 43
BC1002_3142 YP_003606698.1 Lytic transglycosylase catalytic VFG0719 Protein 9e-17 42