Gene Information

Name : BC1002_1312 (BC1002_1312)
Accession : YP_003604901.1
Strain :
Genome accession: NC_014117
Putative virulence/resistance : Virulence
Product : small multidrug resistance protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2076
EC number : -
Position : 1470205 - 1470543 bp
Length : 339 bp
Strand : +
Note : PFAM: small multidrug resistance protein; KEGG: bxe:Bxe_A2502 quaternary ammonium efflux pump, 4 TMS small multidrug resistance (SMR) family, GacE

DNA sequence : 
ATGCGCGTACCCTCGTATGCGCTGCTCGCGATCGCGATCGTCGCCGAGGTGATTGCGACTTCCGCGATGCGGGCCTCGGA
CGGTTTCTCGCGCCTGCTGCCGTCGATGGTCGTCGTGCTTGGCTACGGCATCGCGTTTTATTGCCTGTCGCTGACGCTAA
GGAGCGTTCCGGTCGGCATCGTCTACGCGATCTGGTCCGGCGCCGGCATCGTGCTGATCACGCTGGTCGCGCTGGTGCTG
TACCGGCAGGTACCCGACGTGCCGGCGATCATCGGGCTGGGATTGATCGTCGCAGGCGTCGCGGTGTTGAATCTCTTCTC
GAAGATGCAGGCGCATTGA

Protein sequence : 
MRVPSYALLAIAIVAEVIATSAMRASDGFSRLLPSMVVVLGYGIAFYCLSLTLRSVPVGIVYAIWSGAGIVLITLVALVL
YRQVPDVPAIIGLGLIVAGVAVLNLFSKMQAH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42067.1 hypothetical protein Not tested PAI II 536 Protein 4e-16 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1002_1312 YP_003604901.1 small multidrug resistance protein BAC0324 Protein 1e-21 62
BC1002_1312 YP_003604901.1 small multidrug resistance protein BAC0322 Protein 4e-21 59
BC1002_1312 YP_003604901.1 small multidrug resistance protein BAC0377 Protein 1e-21 59
BC1002_1312 YP_003604901.1 small multidrug resistance protein CP001138.1.gene1489. Protein 6e-21 55
BC1002_1312 YP_003604901.1 small multidrug resistance protein CP004022.1.gene1549. Protein 3e-18 54
BC1002_1312 YP_003604901.1 small multidrug resistance protein BAC0002 Protein 3e-20 54
BC1002_1312 YP_003604901.1 small multidrug resistance protein NC_010410.6003348.p0 Protein 3e-20 54
BC1002_1312 YP_003604901.1 small multidrug resistance protein NC_002695.1.913273.p Protein 2e-14 49
BC1002_1312 YP_003604901.1 small multidrug resistance protein BAC0150 Protein 2e-14 49
BC1002_1312 YP_003604901.1 small multidrug resistance protein BAC0192 Protein 7e-17 49
BC1002_1312 YP_003604901.1 small multidrug resistance protein BAC0325 Protein 1e-12 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BC1002_1312 YP_003604901.1 small multidrug resistance protein VFG1586 Protein 2e-16 42