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Name : serS (RIEPE_0191) Accession : YP_003603069.1 Strain : Candidatus Riesia pediculicola USDA Genome accession: NC_014109 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 194795 - 196111 bp Length : 1317 bp Strand : + Note : identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414 DNA sequence : ATGTTAGATTCAAAAAAATTTTTTTCCAAATTAGAGGATGTCGAACAAAGACTGTCTGAAAGAGGATTTATTTTAAACAG AGAGGAAATTATCAAGTTAAAAAAAGAAGAAAAAATACTTGAAACTGAAATTAATTCATTAAGAATAAAAAGGAACTTAA TTTCAAAAACTATTGGAATTGAAAAGAGAATATCAAAAAATGTCAATATTTTACATATAAAAGCAAAAAAAATTAGTGAA GAGCTTTCTTGTAAAGCATTGAAGTTAAAAACTATAAAAAGTAAAATCCGAGAAATATTTTCGGAAATACCAAATTTACC TGAAAAACATATTTTGTCTTCAAATAGAAAAAAAGATGATATTGAAATCAAAAGATGGGGAAAAAAGAGAAGGTTCAATT TCAAAATTAAAAATCATATTGAATTAACTAAAAAAAATAAGAACATTGATTTTGCTATTGCAGCTAAAATATCCAAATCC AAATTTTCTGTCATCTCCGGCTCACTAGCTAGACTTTATAGAGCTCTATCTCAATTTATGATAGATCTACATGTCGATCA ACACGGTTATTATGAAGTTTTAGTTCCTTACATAGTAAATTACCAATCTTTATACCATACAGGACACCTTCCAAAGTTTA TGAACGATTTATTTTCCATCAAATTAAACAAAAATCTGAAAGAAAATCATGAAGATTATTTCTTAGTACCGACCGGAGAA GTTCCAATGGTTAATTTGGTTCAAGACAAAATATTTTCGTATGAATCTCTTCCTATTAAATTAATATCCAATACAGCTTG TTTTCGTTTAGAAGCTGGATCTTATGGAAAAAAAACCAGGGGTTTAATTAGATCACATCAATTTGATAAAGTAGAGCTCG TTCAAATAGTTCAACCAGAAAAATCCAGAACGGCTTTAGAAGAACTAACTTCGCATGCTGAAAAAATTCTTGAATTGTTG AAACTACCATATAGAAAATTAATATTGCATTCTGAAAATCTAGGATTTTCTTCTAGTAAAACATACGATTTAGAAGTATG GTTCCCATCACAAAAAAAATATATTGAAATATCCTCTTGTTCAAATACAACTGACTTTCAGTCAAGAAGAATGAATACTA AATTCAAAAAAGGAAACGATCGTTCTAAACAATTAGTTCATATTTTGAATGGATCTGGTCTACCAATTGGTAGAACTATG GCAGCTATATTAGAGAATTATCAGATGTGCGATGGATCTATCAAAATACCAGAAATATTAAAAAGATACATGAATGAGTT GGATCAAATTTCTTTAGATGAACCAATAAGATATTAG Protein sequence : MLDSKKFFSKLEDVEQRLSERGFILNREEIIKLKKEEKILETEINSLRIKRNLISKTIGIEKRISKNVNILHIKAKKISE ELSCKALKLKTIKSKIREIFSEIPNLPEKHILSSNRKKDDIEIKRWGKKRRFNFKIKNHIELTKKNKNIDFAIAAKISKS KFSVISGSLARLYRALSQFMIDLHVDQHGYYEVLVPYIVNYQSLYHTGHLPKFMNDLFSIKLNKNLKENHEDYFLVPTGE VPMVNLVQDKIFSYESLPIKLISNTACFRLEAGSYGKKTRGLIRSHQFDKVELVQIVQPEKSRTALEELTSHAEKILELL KLPYRKLILHSENLGFSSSKTYDLEVWFPSQKKYIEISSCSNTTDFQSRRMNTKFKKGNDRSKQLVHILNGSGLPIGRTM AAILENYQMCDGSIKIPEILKRYMNELDQISLDEPIRY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 5e-76 | 41 |
