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Name : lysS (RIEPE_0124) Accession : YP_003603002.1 Strain : Candidatus Riesia pediculicola USDA Genome accession: NC_014109 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 118498 - 119970 bp Length : 1473 bp Strand : + Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGAAAACTTTAAGAAATGAAATGAAAACAAGAAAAGAATCGTTCTTTCAGAACGATTGCGAAGATTTTAAAAGAGACCA TTTATCGGAAGATTTATATAAGAAATTTTATGAAAAAGAGTCTAAAGAGTTAAAAAAATTAGAAAATTATGTTTCTGTTT CTGGAAGAATGATCTCCAAAAGGATATTTGGAAAGGCGTCTTTCTTTACACTACAAGATATGTCTGGAAAGATTCAAGTA TACGTCTCTTCAAATCATATTAAAGAAGAAATTTATGAGAAGAAATTTAAAAAATGCAATTTAGGAGATTTAATAGGAGT TCACGGAAAAGTATTTAAAACAAAAACAGGAGAATTAACTGTAGATTGTAGAAAGATTTTTCTATTAACTAGATCATATC GTACGATATCAAGTAAATTTTATGGACTTAAAAATAAAGAGATTCAACATAGAAATCGATGTTTAGATCTTATTTTAAAT CAAAGATCTAGAAACACTTTTATAATACGATCGAAGATCATCAGTTGGTTGCGTTGTTTTATGAACGAAAAAGGATTCAT GGAGGTAGAAACTCCGATCATGCAGCCGATGTATGGCGGAGCTTCAGCGAAGCCTTTTATGACTCGTCATAACGCATTAA AATCTGAATTGTATCTTCGAATAGCTCCCGAGCTATATCTAAAAAGATTGGTCATTGGAGGATTTGAAAAGATCTTTGAA ATTGGTAAAAATTTCAGAAATGAAGGAGTGTCGACCATACATAATCCAGAATTTACGATGATGGAATTCTATGAAGCTTA TAAAAATTATCTTGATCTCATGGATTTTATTGAAAATTTATTTCATGAAATTGTTGAGTCAACTCTTAAAAAGAGTGGAA TAAAGTACGGAGAAAACTTTCTGAATTTCGACAAAAGATTTAAAAAAGTTACAATGAAGCAATCTATCTTGCAAAATATT TCTAATCAATTTTCCATGAAAGATTTAGAGAATAAGGATAAAGTCTTTACGATTGCAAGATCATACGGAGTACAAGTTGA GAAAGAAGATTCTATAGGAGAGATACAGTATAAAATTTTTGAAAAAGTAGTTGAGAAGAAATTGATACAACCAACTTTCG TTACCGAATATCCGATCGATGTGTCTCCTCTCTCGAAGAGAAGTAGAGAGAATCCGTTGGTTGCAGAACGATTTGAGCTG TTCATTGGAGGATATGAAATAGCCAATGGATTTTCCGAGCTAAATGATCCAGTTGATCAAACAAGCCGGTTTCTTCAACA ATCTCGAAAAAATGGGATTAGAAGAGACATCGATGAAGATACCTTTTATGATAAAGATTATATCACTTCGCTTGAATATG GATTACCTCCAACGGCAGGAGTAGGAATAGGGATTGATAGGTTGGTGATGTTATTAACAAATCGTCGTTCGATTCGAGAT GTCATATTTTTTCCTGCTCTCAGAAAGAAATAA Protein sequence : MKTLRNEMKTRKESFFQNDCEDFKRDHLSEDLYKKFYEKESKELKKLENYVSVSGRMISKRIFGKASFFTLQDMSGKIQV YVSSNHIKEEIYEKKFKKCNLGDLIGVHGKVFKTKTGELTVDCRKIFLLTRSYRTISSKFYGLKNKEIQHRNRCLDLILN QRSRNTFIIRSKIISWLRCFMNEKGFMEVETPIMQPMYGGASAKPFMTRHNALKSELYLRIAPELYLKRLVIGGFEKIFE IGKNFRNEGVSTIHNPEFTMMEFYEAYKNYLDLMDFIENLFHEIVESTLKKSGIKYGENFLNFDKRFKKVTMKQSILQNI SNQFSMKDLENKDKVFTIARSYGVQVEKEDSIGEIQYKIFEKVVEKKLIQPTFVTEYPIDVSPLSKRSRENPLVAERFEL FIGGYEIANGFSELNDPVDQTSRFLQQSRKNGIRRDIDEDTFYDKDYITSLEYGLPPTAGVGIGIDRLVMLLTNRRSIRD VIFFPALRKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-109 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003603002.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-109 | 49 |
