Gene Information

Name : vicR (LCRIS_00073)
Accession : YP_003600545.1
Strain : Lactobacillus crispatus ST1
Genome accession: NC_014106
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 74551 - 75267 bp
Length : 717 bp
Strand : +
Note : -

DNA sequence : 
ATGCCAAAGAAGATTCTCGTCGTCGACGATGAAAAGCCGATTTCTGATATTATCAAATTTAATTTAACTAAGGAAGGCTT
TGATGTCGACACCGCCTATGATGGCGAAGAAGCTGTTAAAAAAGTTGACGAATACGACCCGGATCTAATGATTCTGGATT
TGATGTTGCCCAAAAAAGATGGGTTGGAAGTTGCGCGTGAAGTTCGTCAAACGCATGACATGCCAATCATCATGGTAACT
GCTAAAGATACTGAAATTGATAAAGTCTTAGGACTGGAAATGGGTGCAGATGACTACGTAACCAAGCCGTTTTCTAACCG
GGAATTAGTTGCCCGTGTGAAGGCTAACCTGCGTCGTCGTGATATTGTTAAAAAAGCAGAAGCTGCCAGCCAAGAAGAGA
CCGATAAGAATATTAAGATCGGTAACTTGGTCATTATGCCAGATGCCTATATTGTAGAAAAAAATGGTAAGAAGATTGAA
CTTACTCACCGTGAATTTGAACTTCTTTACTATTTAGCTCAACATATGGGACAAGTTATGACTCGTGAACACCTGCTTCA
GACTGTTTGGGGTTATGACTACTTCGGTGATGTGCGGACTGTAGACGTAACGGTGCACCGTTTAAGAGAAAAGATTGAAG
ATAATCCAATCCAACCTCAAATTTTAGTTACCCGTCGTGGTGTTGGCTATTATGTAAAACAGCCGAGTGAAGAATAA

Protein sequence : 
MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLEVAREVRQTHDMPIIMVT
AKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDIVKKAEAASQEETDKNIKIGNLVIMPDAYIVEKNGKKIE
LTHREFELLYYLAQHMGQVMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYVKQPSEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 6e-32 42
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 4e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
vicR YP_003600545.1 response regulator NC_012469.1.7685629. Protein 5e-66 65
vicR YP_003600545.1 response regulator NC_002951.3237708.p0 Protein 1e-50 54
vicR YP_003600545.1 response regulator NC_003923.1003749.p0 Protein 1e-50 54
vicR YP_003600545.1 response regulator NC_002758.1121668.p0 Protein 1e-50 54
vicR YP_003600545.1 response regulator NC_009641.5332272.p0 Protein 1e-50 54
vicR YP_003600545.1 response regulator NC_013450.8614421.p0 Protein 1e-50 54
vicR YP_003600545.1 response regulator NC_007793.3914279.p0 Protein 1e-50 54
vicR YP_003600545.1 response regulator NC_002952.2859905.p0 Protein 1e-50 54
vicR YP_003600545.1 response regulator NC_007622.3794472.p0 Protein 9e-51 54
vicR YP_003600545.1 response regulator NC_002745.1124361.p0 Protein 1e-50 54
vicR YP_003600545.1 response regulator NC_009782.5559369.p0 Protein 1e-50 54
vicR YP_003600545.1 response regulator HE999704.1.gene2815. Protein 3e-43 51
vicR YP_003600545.1 response regulator NC_012469.1.7686381. Protein 8e-39 46
vicR YP_003600545.1 response regulator AE000516.2.gene3505. Protein 8e-33 43
vicR YP_003600545.1 response regulator CP001138.1.gene4273. Protein 4e-32 43
vicR YP_003600545.1 response regulator BAC0533 Protein 2e-32 43
vicR YP_003600545.1 response regulator CP000034.1.gene3834. Protein 9e-33 43
vicR YP_003600545.1 response regulator CP000647.1.gene4257. Protein 2e-32 43
vicR YP_003600545.1 response regulator NC_002695.1.915041.p Protein 9e-33 43
vicR YP_003600545.1 response regulator CP001918.1.gene5135. Protein 4e-28 43
vicR YP_003600545.1 response regulator AF155139.2.orf0.gene Protein 6e-35 43
vicR YP_003600545.1 response regulator FJ349556.1.orf0.gene Protein 1e-34 43
vicR YP_003600545.1 response regulator NC_002952.2859858.p0 Protein 9e-33 42
vicR YP_003600545.1 response regulator NC_007622.3794948.p0 Protein 9e-33 42
vicR YP_003600545.1 response regulator NC_003923.1003417.p0 Protein 9e-33 42
vicR YP_003600545.1 response regulator AE015929.1.gene1106. Protein 3e-26 42
vicR YP_003600545.1 response regulator NC_013450.8614146.p0 Protein 9e-33 42
vicR YP_003600545.1 response regulator NC_002951.3238224.p0 Protein 9e-33 42
vicR YP_003600545.1 response regulator NC_007793.3914065.p0 Protein 9e-33 42
vicR YP_003600545.1 response regulator NC_002758.1121390.p0 Protein 9e-33 42
vicR YP_003600545.1 response regulator NC_010079.5776364.p0 Protein 9e-33 42
vicR YP_003600545.1 response regulator NC_005054.2598277.p0 Protein 4e-33 42
vicR YP_003600545.1 response regulator NC_014475.1.orf0.gen Protein 4e-33 42
vicR YP_003600545.1 response regulator AF162694.1.orf4.gene Protein 9e-34 42
vicR YP_003600545.1 response regulator AE016830.1.gene1681. Protein 1e-37 42
vicR YP_003600545.1 response regulator AM180355.1.gene1830. Protein 6e-34 42
vicR YP_003600545.1 response regulator CP004022.1.gene3215. Protein 2e-31 42
vicR YP_003600545.1 response regulator NC_010410.6002989.p0 Protein 2e-23 42
vicR YP_003600545.1 response regulator NC_011595.7057856.p0 Protein 2e-23 42
vicR YP_003600545.1 response regulator DQ212986.1.gene4.p01 Protein 2e-33 41
vicR YP_003600545.1 response regulator NC_010400.5986590.p0 Protein 9e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
vicR YP_003600545.1 response regulator VFG1702 Protein 2e-32 42
vicR YP_003600545.1 response regulator VFG1563 Protein 2e-32 41
vicR YP_003600545.1 response regulator VFG1389 Protein 3e-29 41