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Name : lysS (LCRIS_00285) Accession : YP_003600757.1 Strain : Lactobacillus crispatus ST1 Genome accession: NC_014106 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 295468 - 297015 bp Length : 1548 bp Strand : + Note : - DNA sequence : TTGGCAAAGAATGAAATGAACGACCAATTAATAGTCCGTCGCCAAAAGATGGAAGAATTACGTGAAAACGGAATTGAACC ATTTGGCCGAAGAAAATTTGATCGTCAAGATTTGGCAAGTACTTTGGAAGAAAAGTATGGCAATGAAGATAAGGAAGAAT TAAACGCTGATATGCCTAAGACCAAAATTGCAGGTCGTATGCTTGCAAAACGTGGTAAGGGTAAGGTTGGTTTTGCTGAT CTTTATGACCGTACTGGTAAGATTCAAATTTATGTACGTAAGGATATTGTTGGCGAAGATAACTACAAGATCTTTAAGAA ATCTGATATTGGTGATTTCTTAGGTATTGAGGGTGAAGTTATGAAGACTGATACTGGAGAGCTTACTATTAGAGCCCTTC ACGTAACTTTCTTATCAAAGGCTCTTCGTCCATTACCAGATAAGTACCATGGTTTAAAGGACGTTGAGGCAATTTATCGT CAACGTTACCTTGATTTGATTACCAACCATGATAGTTACATGCGTTTTGTTCACCGTACCCAAATTATCCAAGCTATTCG TGACTACTTAAATGGTCAAAACTTCTTGGAGGTTGAAACTCCAGTACTTCACAACATTCCTGGTGGTGCTGAAGCCCGTC CATTTATTACTCACCACAACGCTTTGGATATTAACCTTTACATGAGAATTGCTTTGGAACTTCCACTTAAGCGTTTGATT GTTGGTGATATGGAACGTGTTTACGAAATCGGCCGTGTATTCAGAAACGAAGGTTTGGACACTCACCACAACCCAGAATT TACTGAACTTGAAAGTTACGCAGCATACTGGGACTACCATGATGTTATGGATGAAGCTGAAGGTATTATCCGTGCTGCAG CTAAGGTTGTTTCAGATGACGGTAAGATCACTTACCAAGGTACTGACATTGACTTAGGCAAGCCATTCCGTCGCGTTCAC ATGGTTGACTTGATCAAGGAAAAGACTGGCGTTGACTTCTGGAAGCCAATGACTCTTGAAGAAGCAACTAAGATTGCGGA AGACCACGACATCCACGTTGAAAAGTTCTGGAAAGTTGGTCACATTATTAACGCCTTCTTTGAAAAGTACTGTGAAGAAA CTATTGTTGACCCAACCTTCGTTTACGGTCACCCAGTAGAAATCTCACCACTTGCTAAGAAGAATGCTGACGATCCAAGA TTTACTGATCGTTTCGAAATTTACATCATGGGTGAAGAATACGGTAACGCCTTCTCAGAATTGAACGATCCTGACGACCA ACGTGAACGTTTCGAAGCTCAAATGGAAGAACGTGAAGCAGGTAACGACGAAGCTGACATGATCGATGAAGATTACCTTC GTGCTATGGAATACGGTATGCCACCTACAGGTGGTTTGGGTATCGGTATTGACCGTTTGGTAATGCTTTTGACTGATGCT CCAGCTATTCGTGATGTTCTTTTGTTCCCAACCATGCGTCCAGAACGTGTTGAAAGCGTAGAAGCTGAAGTTAAGGCTGA CATGGCTAAGAAGAATAAGAAGGACTAA Protein sequence : MAKNEMNDQLIVRRQKMEELRENGIEPFGRRKFDRQDLASTLEEKYGNEDKEELNADMPKTKIAGRMLAKRGKGKVGFAD LYDRTGKIQIYVRKDIVGEDNYKIFKKSDIGDFLGIEGEVMKTDTGELTIRALHVTFLSKALRPLPDKYHGLKDVEAIYR QRYLDLITNHDSYMRFVHRTQIIQAIRDYLNGQNFLEVETPVLHNIPGGAEARPFITHHNALDINLYMRIALELPLKRLI VGDMERVYEIGRVFRNEGLDTHHNPEFTELESYAAYWDYHDVMDEAEGIIRAAAKVVSDDGKITYQGTDIDLGKPFRRVH MVDLIKEKTGVDFWKPMTLEEATKIAEDHDIHVEKFWKVGHIINAFFEKYCEETIVDPTFVYGHPVEISPLAKKNADDPR FTDRFEIYIMGEEYGNAFSELNDPDDQRERFEAQMEEREAGNDEADMIDEDYLRAMEYGMPPTGGLGIGIDRLVMLLTDA PAIRDVLLFPTMRPERVESVEAEVKADMAKKNKKD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-110 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003600757.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 9e-111 | 47 |
