Gene Information

Name : Cseg_0608 (Cseg_0608)
Accession : YP_003591738.1
Strain : Caulobacter segnis ATCC 21756
Genome accession: NC_014100
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 644746 - 646206 bp
Length : 1461 bp
Strand : -
Note : KEGG: ccs:CCNA_03424 AAA-family response regulator TacA; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase

DNA sequence : 
ATGACCAAGACGGTGCTGGTCGTCGATGACGACCCGACCCAACGTCGATTGATTCAGGCGGTGCTCGAGCGCGACGGTTT
CGCGGTCTCGCACGCCGACAGCGGCGACGCGGCGATCGCGCACCTGACCTCGGGCGCGCCCGCCGACGTGGTGCTGCTGG
ACCTGGTCATGCCCGGCCTTTCGGGCCAGGACGCGCTGAAGGAAATGCGCGCCCGCGGCTTTTCCCAACCCGTCATCGTT
CTGACCGCCAGCGGCGGCGTCGACACCGTGGTCAAGGCCATGCAGGCCGGGGCCAGCGACTTCTTCATCAAGCCGGCCAG
CCCGGAGCGCATCACCGTCTCGATCCGCAACGTCCTGTCGATGGGCGACCTGAAGGGCGAGGTCGAGCGGCTGACCAAGC
GCGCGGTCGGCAAGACCACCTTCTCGGACCTGATCGGCGCCTCGCCGGCCATGAGCCTGGTCAAGCGCATGGGCGAACGC
GCGGCCAAGAGCGCCATCCCCGTTCTGATCACCGGCGAAAGCGGCGTCGGCAAGGAGCTGATCGCTCGCGCGGTGCACGG
CTCGTCCGACCGCGCCGGCAAGCCGTTCGTGGCCGTCAACTGCGGCGCCATCCCCGAGAACCTCGTGGAGTCGATCCTGT
TCGGCCACGAGAAGGGCAGCTTCACCGGCGCCACCGACAAGCACCTGGGCAAGTTCAAGGAAGCCGACGGCGGCACCCTG
TTCCTCGACGAAGTCGGCGAACTTCCGCTGGACGTGCAGGTCAAGCTGCTGCGCGCCCTGCAGGAAGGCGAGATCGACCC
GATCGGCTCCAAGCGCTCGCTCAAGGTCGACGTCCGGATCGTCTCGGCGACCAACCGCGACCTGGCCCAGGCCGTTTCGG
CCGGCCGTTTCCGCGAAGACCTCTACTACCGCCTGAACGTCTTCCCGATCGAGGCCCCGTCCCTGCGCGAGCGGCGCGAG
GACATCCCCGCCCTGGTCGAGGCCTTCATCCGTCGCTTCAACGTCGAGGAAGGCAAGCGCGTCATCGGCGCCGCCCCCGA
GACGATGCGACTGCTGGCCGCCTTCGACTGGCCGGGCAACGTCCGCCAGCTGGAGAACGCGGTCTATCGCGCCATCGTCC
TCTCCGACGCGCCCTATCTGCAGCCCTACGACTTCCCGGCCATTTCGGGCCAGGCCGCGCCGGCGGAGCCCGCCGCGCCG
ACCCCGACCGCCGCCGCCATGCTGCAAGCCGCGCACGCCGCCATGGCCGCGCCCGCGGCCGACGCGCCGGTCCGCATCCT
GGACGAACGGGGCCACCTGAGAACCCTGGAAGAGATCGAACGCGACCTGATCCAGCACGCCATCGACGTCTATGCCGGCC
ACATGAGCGAGGTGGCTCGCCGCCTCGGCATTGGCCGCTCGACCCTCTATCGCAAGGTTCGCGAGCAGGGCATCGAGGTC
GACCTGAAGGAAGCCGGCTGA

Protein sequence : 
MTKTVLVVDDDPTQRRLIQAVLERDGFAVSHADSGDAAIAHLTSGAPADVVLLDLVMPGLSGQDALKEMRARGFSQPVIV
LTASGGVDTVVKAMQAGASDFFIKPASPERITVSIRNVLSMGDLKGEVERLTKRAVGKTTFSDLIGASPAMSLVKRMGER
AAKSAIPVLITGESGVGKELIARAVHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGKFKEADGGTL
FLDEVGELPLDVQVKLLRALQEGEIDPIGSKRSLKVDVRIVSATNRDLAQAVSAGRFREDLYYRLNVFPIEAPSLRERRE
DIPALVEAFIRRFNVEEGKRVIGAAPETMRLLAAFDWPGNVRQLENAVYRAIVLSDAPYLQPYDFPAISGQAAPAEPAAP
TPTAAAMLQAAHAAMAAPAADAPVRILDERGHLRTLEEIERDLIQHAIDVYAGHMSEVARRLGIGRSTLYRKVREQGIEV
DLKEAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 9e-54 41
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 9e-54 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cseg_0608 YP_003591738.1 Fis family transcriptional regulator BAC0089 Protein 6e-78 46
Cseg_0608 YP_003591738.1 Fis family transcriptional regulator BAC0467 Protein 1e-79 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cseg_0608 YP_003591738.1 Fis family transcriptional regulator VFG1214 Protein 1e-67 43
Cseg_0608 YP_003591738.1 Fis family transcriptional regulator VFG0116 Protein 4e-64 43
Cseg_0608 YP_003591738.1 Fis family transcriptional regulator VFG1249 Protein 4e-69 43