Gene Information

Name : Cseg_3529 (Cseg_3529)
Accession : YP_003594576.1
Strain : Caulobacter segnis ATCC 21756
Genome accession: NC_014100
Putative virulence/resistance : Virulence
Product : FliI/YscN family ATPase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.14
Position : 3859726 - 3861129 bp
Length : 1404 bp
Strand : +
Note : SMART: AAA ATPase; TIGRFAM: ATPase, FliI/YscN family; KEGG: ccs:CCNA_03135 flagellum-specific ATP synthase FliL; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein

DNA sequence :
TTGCCCGACTGTGGCGACACGGAGGCAACGGTCAAGTTCGGCGCCGCCGTGGGGTTTTCGGGGTCCAGCTTGCGCAGTCT
CATCGCCGCCGTCGAACGTCTCGACCCGCTGACCGTCTATGGTCGCGTGGCCGCCGTGAACGGCCTGCTGATCGAGGCGC
GTGGCGGCCTGACCCGCCTGGCGGTCGGCGCCCGGGTCGAGATCGAGCGTCTGGGCCAGACCGCCCTGCCCGCCGAGGTG
GTCGGCTTCCGCGAGACCCGCGCCCTGCTGATGCCCTTCGGCCCCGTCGAGGGCGTCGCGCCCGGCGCGGAGATCCGCAT
CGTCCCCGAAGGCGCCGTGGTCCGCCCGACCAAGGCGTGGCTGGGCCGGATCATCAACGCCTTCGGCGAGCCGATCGACG
GCCTGGGTCCGCTGCCGCAGGGCGAGGTTCCCTATCCGCTGAAGACCGCCCCGCCGCCGGCCCACGCCCGCGGCCGGGTG
GGCGAGCGCCTGGATCTGGGCGTGCGCTCGATGAACGTCTTCACCACCACATGCCGGGGCCAGCGCCTGGGCATTTTCGC
CGGCTCGGGCGTCGGCAAGTCGGTGCTGCTGTCGATGCTGGCGAAAGAAGCCACCTGCGACGCCGTCGTCGTCGGCCTGA
TCGGCGAGCGGGGCCGCGAGGTCCGCGAGTTCGTCGAGGAGACCCTGGGCGAGGAAGGCCTGCGCCGCGCCGTCGTCGTG
GTCGCCACCTCGGACGAGCCGGCCCTGACCCGCCGCCAGGCCGCCTACATGACCCTGGCGATCAGCGAATACATGCGCGA
CCAGGACCAGGAAGTCCTGTGCCTGATGGACTCGGTCACCCGCTTCGCCATGGCCCAGCGCGAGATCGGCCTGGCCGCCG
GCGAGCCGCCGACCACCAAGGGCTACACGCCCACCGTCTTCACGGAGCTGCCCAAGCTGCTGGAGCGCGCCGGCCCGGGG
CCCATCCGCGCCGACGGCACCACCGCCGCGCCGATCACGGCGCTCTTCACCGTGCTGGTGGACGGCGATGACCACAACGA
GCCGATCGCCGACGCCACGCGCGGTATCCTGGACGGCCACATCGTCATGGAGCGCGCCATCGCCGAGCGCGGCCGCTTCC
CGGCCATCAACGTGCTGAAGTCGATCAGCCGGACCATGCCAGGCTGCCAGCTCCCGCACGAGCGCGACATCGTCAAGGGC
GCGCGCCAGGTGATGGCCGCCTATTCGAACATGGAAGAGCTGATCCGCATCGGCGCCTATCGCGCCGGGGCCGACCCGGT
GGTCGACCGCGCGATCCGCCTGAACCCCGCCATCGAGGCTTTCCTTAGCCAGGATAAGGAAGAGGCAACCAGTCTCGACG
ACTCTTTCGGCTTGCTGGGCCAGATCCTGCAGAGTGAGTACTGA

Protein sequence :
MPDCGDTEATVKFGAAVGFSGSSLRSLIAAVERLDPLTVYGRVAAVNGLLIEARGGLTRLAVGARVEIERLGQTALPAEV
VGFRETRALLMPFGPVEGVAPGAEIRIVPEGAVVRPTKAWLGRIINAFGEPIDGLGPLPQGEVPYPLKTAPPPAHARGRV
GERLDLGVRSMNVFTTTCRGQRLGIFAGSGVGKSVLLSMLAKEATCDAVVVGLIGERGREVREFVEETLGEEGLRRAVVV
VATSDEPALTRRQAAYMTLAISEYMRDQDQEVLCLMDSVTRFAMAQREIGLAAGEPPTTKGYTPTVFTELPKLLERAGPG
PIRADGTTAAPITALFTVLVDGDDHNEPIADATRGILDGHIVMERAIAERGRFPAINVLKSISRTMPGCQLPHERDIVKG
ARQVMAAYSNMEELIRIGAYRAGADPVVDRAIRLNPAIEAFLSQDKEEATSLDDSFGLLGQILQSEY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 4e-72 48
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 7e-61 46
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 7e-61 46
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-61 46
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-61 46
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-61 46
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-68 44
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-68 44
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-68 43
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 4e-68 43
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 7e-67 43
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 8e-58 43
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 4e-66 43
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 5e-67 43
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 4e-67 43
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 4e-67 43
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 3e-58 43
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 5e-56 42
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 3e-61 42
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 4e-62 42
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 1e-61 42
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 6e-55 42
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 6e-55 42
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-60 42
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-60 42
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 1e-59 42
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 1e-59 42
escN YP_003236088.1 translocator EscN Virulence LEE Protein 1e-61 41
escN CAI43874.1 EscN protein Virulence LEE Protein 1e-61 41
escN CAC81862.1 EscN protein Virulence LEE II Protein 3e-61 41
escN AAK26715.1 EscN Virulence LEE Protein 2e-61 41
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 4e-61 41
escN AAL57542.1 EscN Virulence LEE Protein 2e-61 41
escN NP_290268.1 hypothetical protein Virulence LEE Protein 3e-61 41
escN AAC31513.1 L0034 Virulence LEE Protein 2e-61 41
ECs4568 NP_312595.1 EscN Virulence LEE Protein 3e-61 41
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 2e-61 41
escN AAC38383.1 EscN Virulence LEE Protein 3e-61 41
escN YP_003223475.1 translocator EscN Virulence LEE Protein 1e-61 41
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-57 41
unnamed AAL06369.1 EscN Virulence LEE Protein 3e-60 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cseg_3529 YP_003594576.1 FliI/YscN family ATPase VFG1254 Protein 7e-69 48
Cseg_3529 YP_003594576.1 FliI/YscN family ATPase VFG2331 Protein 1e-70 47
Cseg_3529 YP_003594576.1 FliI/YscN family ATPase VFG2499 Protein 1e-76 47
Cseg_3529 YP_003594576.1 FliI/YscN family ATPase VFG2144 Protein 5e-75 46
Cseg_3529 YP_003594576.1 FliI/YscN family ATPase VFG0515 Protein 1e-61 46
Cseg_3529 YP_003594576.1 FliI/YscN family ATPase VFG0390 Protein 4e-71 46
Cseg_3529 YP_003594576.1 FliI/YscN family ATPase VFG0048 Protein 5e-72 45
Cseg_3529 YP_003594576.1 FliI/YscN family ATPase VFG0192 Protein 9e-69 45
Cseg_3529 YP_003594576.1 FliI/YscN family ATPase VFG0730 Protein 2e-61 41
Cseg_3529 YP_003594576.1 FliI/YscN family ATPase VFG0812 Protein 1e-61 41