Gene Information

Name : Cseg_1013 (Cseg_1013)
Accession : YP_003592136.1
Strain : Caulobacter segnis ATCC 21756
Genome accession: NC_014100
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1088321 - 1088992 bp
Length : 672 bp
Strand : +
Note : KEGG: ccs:CCNA_02845 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver

DNA sequence : 
ATGCGTATTCTGATTATCGAAGACGACCTGGAAGCCGCCGGTGCCATGGCGCACGGCCTCACCGAAGCCGGCTATGAGGT
CGAGCACGCGCCCGACGGCGAGGCCGGCCTGGGCGTCGCCCAGAAGGGCGGCTTCGATGTGCTGATCGTCGACCGGATGA
TGCCGAAGATGGACGGCGTGCAAGTGGTCGAGACGCTGCGCCGCGAGGGCGACCAGACGCCGGTGCTGTTCCTCTCGGCC
CTGGGCGAAATCAACGACCGCGTCACCGGCCTGCGCGCCGGGGCCGACGACTATCTGGTCAAGCCCTACGCCTTCCCCGA
GCTGATGGCCCGCGTCGAGGCCCTGTCGCGCCGTCGCGAGACGGGCGCCGTGGCCACGACCCTGAAGGTCGGCGAGCTCG
AGATGAACCTGATCAACCGGACGGTCCACCGTCAGGGCAAGGAGATCGACCTGCAGCCGCGTGAATTCCAACTGCTGGAG
TTCATGATGCGCCACGCCGGCCAATCGGTGACCCGCACGATGCTGCTGGAGAAGGTCTGGGAGTATCACTTCGACCCGCA
AACCAACGTCATCGACGTTCACATCTCGCGCCTGCGCAGCAAGATCGACAAGGGTTTCGACCGAGCGATGCTGCAGACGG
TGCGTGGCGCCGGCTACCGGCTGGATCCGTAG

Protein sequence : 
MRILIIEDDLEAAGAMAHGLTEAGYEVEHAPDGEAGLGVAQKGGFDVLIVDRMMPKMDGVQVVETLRREGDQTPVLFLSA
LGEINDRVTGLRAGADDYLVKPYAFPELMARVEALSRRRETGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLE
FMMRHAGQSVTRTMLLEKVWEYHFDPQTNVIDVHISRLRSKIDKGFDRAMLQTVRGAGYRLDP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-44 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 9e-44 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cseg_1013 YP_003592136.1 winged helix family two component transcriptional regulator BAC0347 Protein 2e-49 46
Cseg_1013 YP_003592136.1 winged helix family two component transcriptional regulator BAC0125 Protein 1e-48 45
Cseg_1013 YP_003592136.1 winged helix family two component transcriptional regulator BAC0111 Protein 2e-51 45
Cseg_1013 YP_003592136.1 winged helix family two component transcriptional regulator BAC0197 Protein 2e-45 45
Cseg_1013 YP_003592136.1 winged helix family two component transcriptional regulator BAC0638 Protein 7e-44 45
Cseg_1013 YP_003592136.1 winged helix family two component transcriptional regulator BAC0083 Protein 4e-51 44
Cseg_1013 YP_003592136.1 winged helix family two component transcriptional regulator BAC0308 Protein 6e-49 44
Cseg_1013 YP_003592136.1 winged helix family two component transcriptional regulator HE999704.1.gene1528. Protein 2e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cseg_1013 YP_003592136.1 winged helix family two component transcriptional regulator VFG0596 Protein 1e-44 45
Cseg_1013 YP_003592136.1 winged helix family two component transcriptional regulator VFG1389 Protein 6e-39 44