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Name : clpC (HMPREF0675_3324) Accession : YP_003580509.1 Strain : Propionibacterium acnes SK137 Genome accession: NC_014039 Putative virulence/resistance : Virulence Product : negative regulator of genetic competence ClpC/MecB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 352990 - 355524 bp Length : 2535 bp Strand : + Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 DNA sequence : ATGTTCGAACGGTTCACCGATCGGGCCCGCCGGGTCGTCGTCCTGGCCCAGGATGAGGCCAAGGCCCTGAACCACAATTA CATTGGCACTGAGCACCTGCTGCTCGGGCTCATTAGCGAGGGCGAGGGAGTCGCTGCCAAGGCTCTCGAGTCCCTTGACA TTTCACTGGAGGCTGTTCGCGCCCAGGTGGAGGAGATTATTGGTCACGGCACTTCGACGCCGACGGGCCATATTCCCTTT ACCCCGCGTGCCAAGAAGGTTCTTGAGCTGAGCCTGCGCGAAGCCCTCCAGATGAATCATTCGTACATTGGCACCGAGCA CATTCTGCTTGGCCTTATCCGGGAGGGAGAAGGCGTCGCTGCTCAGGTACTGATCCGGCTGGGTGCTGACCTCAACACGG TGCGCAATAGCGTCTTGCAACTGTTGCAGGGATATCAGGGCGACGAGCGTCAGGCCGCCACTTCCGGTGCCCCCGAGGCC GGACCGCAGCAGTCCTCGGCGACGATTCTTGACCAATTCGGTCGCAACCTTACCGAGGCCGCCCGCGACGGCGAGCTCGA CCCGGTTATCGGGCGTGAGAGGGAAATCGAACGAGTCATGGTGGTGCTGAGCCGGCGCACCAAGAATAACCCGGTTCTTA TTGGTGAGCCTGGCGTCGGTAAGTCTGCTTGTGTCGAGGGCCTGGCTCAGGCCATCGTGCGTGGAGACGTTCCCGAGACT CTGCGTGACAAGAAGATTTACTCCCTGGACCTTGGCTCCATGGTTGCGGGATCGCGTTACCGCGGTGATTTCGAGGAGAG GATGAAGAAGGTCCTCAAGGAGATAAAAAATCGCGGGGACATCATCCTGTTCATCGACGAGATCCACACCCTTGTCGGCG CCGGTGCCGCTGAAGGGGCAATCGACGCTGCCAGCATGCTCAAGCCGATGCTGGCTCGCGGCGAGCTGCAGACTATCGGT GCGACGACCCTTGATGAGTACCGTAAGTACATCGAGAAGGACGCCGCCCTGGAGCGTCGCTTCCAGCCGATCCAGGTAGA CGAGCCCTCGATCCCCCTGGCCATCGAGATCCTTAAGGGTCTGCGCGACCGGTACGAGGCCCACCACAAGATCACCATCA CCGACGAGGCAATCACCTCCGCAGCGAATCTTGCGTCCCGTTACATCCAAGACCGCTTCCTGCCAGACAAGGCCATCGAT CTCATTGACGAGGCCGGTGCCCGGATGAACATCCGCCGCATGACGGCCCCGCCGGATCTGCGCGAGTTCGACGAGCGGAT TGCTCGTGTGCGAGTGGAGAAAGAGGCCGCCATCGACGCCCAGGATTTCGAGCGTGCTGCTGGGCTGCGCGACGACGAAA AGAAACTTCTCGCCGAGCGTGAGGCCAAGGAGGAGGAGTGGAAGCAGGGTGACGAGTCGGTGCCAGCCGTGGTCGGCCCT GATGAGATCGCCGAGGTGCTCTCTGGAGCTACCGGAATTCCGGTCTTCAAGCTCACGGAGGAGGAATCCCAGCGTCTGCT CCACATGGAGGACGAGATCGGCAAGCGTTACGTCGGCCAGGAGGACGCCGTTAAGGCCCTGTGCCGCTCTATCCGACGTA CCCGTGCCGGCCTCAAGGACCCGAAGCGTCCGGCAGGTTCGTTCATTTTTGCTGGCCCGTCGGGTGTTGGTAAGACCGAG CTCACCAAGGCGCTCACCGAGTTCCTCTTTGGCGACGAGGACGCCCTCATCACCCTCGACATGAGCGAGTACTCCGAGAA ACACACCGCTTCGCGGATGTTTGGGTCCCCGCCTGGATTCGTCGGGTACGAGGAGGGCGGCCAGCTCACCGAGAAGGTGC GCCGCAAGCCGTTCAGCGTCATTCTCTTTGACGAGATTGAAAAGGCCCACCCCGATATCTTCAACTCTCTGTTGCAGATT CTTGACGAGGGACGTCTTACTGACGCCCAGGGCCGTGTAGTGGACTTTAAGAACACCGTCATTGTGCTGACGACCAACCT TGGCACCCGCGACATTTCCAAATCAGTCAATCTCGGCTTTTCCAAGGCCGACGACGTCGAGTCTAGCTACGAGAAGATGA AGGCCAAGGTTACCGAGGAGCTCAAGGGACACTTCCGTCCCGAGTTCCTCAACCGCCTTGACGAGATCATCGTCTTCCAT CAGCTCACCCAGCCCGACATCCTACGGATTGTCGACCTCATGGTGGGGCAACTGGAGGATCGTCTGGCCGACAAGGACAT GGGTATCGAGGTCACTCCGGCTGCCAAGGAACTGCTGTCCACGCGTGGTTTCGACCCGCTGCTCGGTGCTCGTCCGCTGC GCCGGACGATCCAGCGCGACATCGAGGACGTCCTAGCCGAGAAGATCCTCTTCGGGGAGGTCAAACCTGGTCAGATCGTG GTGGTCGATGCTGCCCCGGAGGGTTCCGAGGAGCCGTTCGTCTTCACCGGCACGGAGCGCTCAGAGCTGCCTGACGAGGT TCCTCCTGAGCTCACCTCTTCGGCAGGGGAAAATAACAGGGGGCAGCAGGGCTGA Protein sequence : MFERFTDRARRVVVLAQDEAKALNHNYIGTEHLLLGLISEGEGVAAKALESLDISLEAVRAQVEEIIGHGTSTPTGHIPF TPRAKKVLELSLREALQMNHSYIGTEHILLGLIREGEGVAAQVLIRLGADLNTVRNSVLQLLQGYQGDERQAATSGAPEA GPQQSSATILDQFGRNLTEAARDGELDPVIGREREIERVMVVLSRRTKNNPVLIGEPGVGKSACVEGLAQAIVRGDVPET LRDKKIYSLDLGSMVAGSRYRGDFEERMKKVLKEIKNRGDIILFIDEIHTLVGAGAAEGAIDAASMLKPMLARGELQTIG ATTLDEYRKYIEKDAALERRFQPIQVDEPSIPLAIEILKGLRDRYEAHHKITITDEAITSAANLASRYIQDRFLPDKAID LIDEAGARMNIRRMTAPPDLREFDERIARVRVEKEAAIDAQDFERAAGLRDDEKKLLAEREAKEEEWKQGDESVPAVVGP DEIAEVLSGATGIPVFKLTEEESQRLLHMEDEIGKRYVGQEDAVKALCRSIRRTRAGLKDPKRPAGSFIFAGPSGVGKTE LTKALTEFLFGDEDALITLDMSEYSEKHTASRMFGSPPGFVGYEEGGQLTEKVRRKPFSVILFDEIEKAHPDIFNSLLQI LDEGRLTDAQGRVVDFKNTVIVLTTNLGTRDISKSVNLGFSKADDVESSYEKMKAKVTEELKGHFRPEFLNRLDEIIVFH QLTQPDILRIVDLMVGQLEDRLADKDMGIEVTPAAKELLSTRGFDPLLGARPLRRTIQRDIEDVLAEKILFGEVKPGQIV VVDAAPEGSEEPFVFTGTERSELPDEVPPELTSSAGENNRGQQG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 71 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_003580509.1 | negative regulator of genetic competence ClpC/MecB | VFG0079 | Protein | 0.0 | 58 |
| clpC | YP_003580509.1 | negative regulator of genetic competence ClpC/MecB | VFG0080 | Protein | 4e-152 | 51 |
