Gene Information

Name : HMPREF0675_4893 (HMPREF0675_4893)
Accession : YP_003582027.1
Strain : Propionibacterium acnes SK137
Genome accession: NC_014039
Putative virulence/resistance : Unknown
Product : glycerophosphodiester phosphodiesterase family protein
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG0584
EC number : 3.1.4.46
Position : 1952645 - 1953499 bp
Length : 855 bp
Strand : -
Note : identified by match to protein family HMM PF03009

DNA sequence : 
GTGTTGAGAACCGTGCTGGGAATGTTTTCCCGGCATGGTGTTTCGCAAGGTTCTGCTACAGTTGTGCCGCCGACGTTGGC
ACAACTACTATGCGCAAGGAAATCTTGTATGTCTACTCAACGAGTTATTGCGCACCGAGGATTGAGTTCTCGTGCGCCTG
AGAATACGATGTCAGCTTTCCGAGCCGCTGTGGAAGCTGGTATCAAGTGGATCGAGACCGATGTTGATATCATTGGTGAC
GGTACCGCGGTACTCATCCACGATAGCTCCTTGGATCGAACCACGAATTGCCGCGGTCGTTATAATGAGTTGACCGCCTC
GGATCTACCTGCCATTGACGCTGGCAGATGGTTTTCGCCCCAGTTCATCGGGGAGCCGCTGCCGCGGTTAGCGGACCTTA
TCGACTTCATGAATGAGACTGGTGTCAACGCCAATATTGAAATCAAGTCGAACGAGGAGGGAGCTCGCAGTTCGCTTCAG
TTACGCGATTCCGTGATCGCAGAGCTTGAAAGACTCAAGCCTGGACGTCAGGTGATTGTGAGCTCGTTCAACCATGTGCT
GTTATCCAAGTTCAAGGAAGCGGCTCCGCAATGGGACGTGGCATGTCTTTATGAGACGGCGGCGCTCTATGACGATTGGC
GTTCCATGCTGGAGCTTGTGGGAGCCACTTACATCCACCCCGAGGATTCTGCACTTACCGAGCGGAGTGTTGCGCAGTTC
AAGGACGCTGGTTTTCGAGTCAACGCGTGGACGGTCAACCGCGCTGATCGTGCGAACCAATTGTTCAATTGGGGAGTCGA
TGGAGTGATATCCGACGTCCCAGATCTGCTGGTCGGCACTGTCGCGGCACATTAA

Protein sequence : 
MLRTVLGMFSRHGVSQGSATVVPPTLAQLLCARKSCMSTQRVIAHRGLSSRAPENTMSAFRAAVEAGIKWIETDVDIIGD
GTAVLIHDSSLDRTTNCRGRYNELTASDLPAIDAGRWFSPQFIGEPLPRLADLIDFMNETGVNANIEIKSNEEGARSSLQ
LRDSVIAELERLKPGRQVIVSSFNHVLLSKFKEAAPQWDVACLYETAALYDDWRSMLELVGATYIHPEDSALTERSVAQF
KDAGFRVNAWTVNRADRANQLFNWGVDGVISDVPDLLVGTVAAH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ugpQ YP_039513.1 glycerophosphoryl diester phosphodiesterase Not tested Type-II SCCmec Protein 3e-39 41
unnamed BAD24824.1 glycerophophory diester phosphodiesterase homolog Not tested Type-V SCCmec Protein 2e-39 41
SH0089 YP_252004.1 hypothetical protein Not tested SCCmec Protein 3e-39 41
SAMSHR1132_00300 YP_005324554.1 glycerophosphoryl diester phosphodiesterase Not tested Type-IIIinv SCCmec Protein 3e-39 41
unnamed ACL99836.1 glycerophosphoryl diester phosphodiesterase- like protein Not tested Type-V SCCmec Protein 2e-39 41
ugpQ BAA86651.1 glycerophosphoryl diester phosphodiesterase homologue Not tested Type-I SCCmec Protein 2e-39 41
MW0029 NP_644844.1 hypothetical protein Not tested Type-IV SCCmec Protein 3e-39 41
unnamed BAG06197.1 glycerophophory diester phosphodiesterase Not tested Type-VII SCCmec Protein 2e-39 41
ugpQ BAB47627.1 glycerophosphoryldiester phophodiesterase Not tested Type-III SCCmec Protein 2e-39 41
SAV0039 NP_370563.1 glycerophosphoryl diester phosphodiesterase-like protein Not tested Type-II SCCmec Protein 3e-39 41
ugpQ BAC57476.1 glycerophosphoryl diester phosphodiesterase homolog Not tested Type-IIIinv SCCmec Protein 2e-39 41
SA0036 NP_373276.2 hypothetical protein Not tested Type-II SCCmec Protein 3e-39 41
unnamed BAB72116.1 hypothetical protein Not tested Type-IVa SCCmec Protein 2e-39 41
SAPIG0040 YP_005732850.1 glycerophosphoryl diester phosphodiesterase Not tested Type-V SCCmec Protein 3e-39 41
unnamed BAB72135.1 hypothetical protein Not tested Type-IVb SCCmec Protein 2e-39 41
SAUSA300_0030 YP_492750.1 putative glycerophosphoryl diester phosphodiesterase Not tested Type-IV SCCmec Protein 3e-39 41
unnamed BAC67569.1 hypothetical protein Not tested Type-IVc SCCmec Protein 2e-39 41
SERP2523 YP_190064.1 glycerophosphoryl diester phosphodiesterase UgpQ Not tested Type-II SCCmec Protein 3e-39 41
SACOL0031 YP_184942.1 glycerophosphoryl diester phosphodiesterase Not tested Type-I SCCmec Protein 3e-39 41
unnamed BAA82224.2 glycerophosphoryldiester phosphodiesterase Not tested Type-II SCCmec Protein 2e-39 41