|
Name : lysS_2 (HMPREF0675_4656) Accession : YP_003581799.1 Strain : Propionibacterium acnes SK137 Genome accession: NC_014039 Putative virulence/resistance : Unknown Product : lysine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1709644 - 1712889 bp Length : 3246 bp Strand : - Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331; match to protein family HMM TIGR00499 DNA sequence : ATGAACATCGCCGCCCTACTCATCGTGTTACGCCTGGTGTTTAGCCGCACCACGTGGGTGGCTATCGCCAACAACGTGTT CTCGTTGTTCATTTTCCCGGTTGACGGTTTCGGTTGGGCCGGTGTCGTGGTCCTGTTGGTGCTGTCGGACGCGCTGTCGC GACGTAAAAGGTTCGCCTGGTGGGTGAGCCTCGTCGTGTTTGGGTTGATGTGGCTGGTGGCGGCCGCGTTCTTTATCATC GTGGTCACCGAGGTTTTCATAGGTTGGCCGACAGACACCCTTAACGACGTTGATCTGGCGGGGTATCTGTTCAACGTGTT TTCGGTTGGCTGGATCTTGGTGGCATTGTTGACTCATCGTCGCGACTTTGCTGCGCACACGGTTCGCGCCAATCTCGGAC GAGCGGTCGTCGTACTCGTTGGCGGTCTGTTGGCTACCGGATTTATTGGGTGGCTATTGGTGTCCCTGACCGGTGGTGTT GGACGGCCACGGAACCGCCTGGTGCACATCATTACTCGCATCCTTCAAGGTAGTGGAGCAGGTATCGCCCAGGAGCCGAC GTCGCCGCACTGGGTGCAAGGTGTGGTCTCATTCCTGCTGGCCGTCGTGCTGGTGGCTGCGCTCGTCGTCATTTTGCGTT CCCAACGCAATATCGCGATGATGAGCCTGTCTGACGAGCTGAGATTACGCCGCCTTCTTGACGAAAATCCGGCTGATTCG CTGGGATATTTTGCCCTGCGCCGTGACAAGGCTGTCGTCTTTTCTCGCAACGGTCATGCCGCCGTCTGTTATCGCACGGA GGCTGGGGTGGCGTTGGCGTCGGGTGACCCAGTTGGCCCGGTTGACCAGTGGCCCGGAGCCATTGACGCATTTCTTGAGG TCGCCCACACCTATGGATGGGTTCCTGCCGTCGTTGGCACCTCAGAGGAAGGTGCGACGACATGGAACCAGGCCGGTTTG AGGGCGATGCGCATCGGCGACGAAGCCATCATCTCCCCGGCTACGTTTAATCTCGATGATCCTGATCTCAAGCCGGTGCG CCATACGGTCACGAAACTGCGCGCGATGGGATACACGACTCGGGTTCGACGCCATGAGGACATCAATCCGCAGGAGTTGC ACAGCCTGATTGACCTGACTGATAAATGGCGTCAAAACGGCGACGAGCGCGGCTTCTCAATGGCGTTGTCTCGGTTGGGG GACCCTCTAGATGGTCGATGTGTCATGGTGGAGGCGATCTACCCCGACGACGGCCCTCGCGCTGGTCAGACGGCCGGTAT TCTGTCCTTTACACCATGGGGTAATGACGGCTTGTCCCTCGACGTCATGAGGCGAGATCTCGACGGAGCAGATAACGGTG TGACTGAACTTATGGTCGCCGGACTCATGGCGGCCGGGCCAGAAATTGGCATTCGGCGGGTGTCCATGAATTTCGCGGTG TTCCGCGAGGCTATTGAGGAAGGCGCTCGAGTGGGTGCTTCCCCGGTGCGTCGGCTTAACCGCTGGTTGGTACTGGTGGC ATCGAAGTGGTTTCAGATTGAGCAGTTGTACCGTTCCAACGTCAAGTACAAGCCGAGCTGGCAGACCCGCTACCTTAATT TCACTGACACCTCTGATCTGGCTCAGGTTGGTCTAGCAATGGGTATTGCTGAGGGTCAGCTCGATATTCCTAATTGGCTT TACCCGGTGGAACCGCCGCCCCAGCCGATATATTCAATTAGCGGGCATCCAGAGATTGCCGAATTCCTGGCTGAAGAACG CGCGCCAATTCTTCCGCAGCGTCGTCTTCCCGAACAGGTTCGTACTCGAATGGCGACCCGTGAGCGTCTTATTGAGTCGG GGGTGGAGGCCTATCCGCCTGACTGTAAGCCTGACCACCGGCTGGGTGACGTCGCCGTCGAGCTGACTGGCCAGGAGATG ACCGTTTCCGGACGGGTGGATGCCTGCCGTGACCACGGCGGGGTCATCTTCGTTGACCTCTTCGACTGGACAGGTGCCTG CCAGCTAGTCATGGAACGTGACACCATGGGCGTCGACAGTCTGCGCGACTTCCGTCATGCGGTGTCTTTGGGAGATCACC TCGTTGCGACTGGAACAGTTGGGGCATCCCGTAACGGGACGCTAAGTCTGGAGATGACGTCGTGGCGGCTAGCAGCGAAG TCGTTGCGACCGCTGCCATCGAGAAGATCGGGATTCAATGACCCAGAGGCCAAGGTTCGTCAGCGTTATCTCGACCTCAT CGTCAACCCCAGTGCGCGCGATCAGCTGCGTGCTCGCTCGAATGCCATCCGCGCGGTGCGAGAAACCCTGCTAAGTCACG ACTACATCGAGGTTGAGACGCCGATTCTGCAGACGATCCACGGCGGGGCGAATGCGCGTCCATTCCACACCCACATCAAC GCCTACGACCTGGACCTTTATCTGCGCATTGCCCCAGAGCTGTACCTCAAGAGGCTTATGGTCGGCGGGGCGGGACGAGT TTTCGAGATTGGTAGGAACTTCCGCAACGAGGGTGCCGACGCTACCCATAATCCCGAATTCACGATGCTCGAGGCCTACC AGGCCTATGGCGATTACGTCCAGATGCGTCACCTCACGAGGGAGATGATCCTGTCCGCAGCCCGCAACGCCACCGGTGGG ACGGTCGTGCGCGGACGTGACCGCAAGGGTGTTGAGCATGAGATCGATTTGGCTAACGAATGGCATGTCATCACTGTCAA CGAGGGAATCTCGCGCGGTTTGGGGGAGGAAGTTACTGCCGATACCCCCAAAGAGACGCTCATCGGGTACGCCAATAAGC TCGGGATTGCGACTTTGCCGAAGTGGAGTCGAGGCGATGTCGTCCTGGAGTTGCACGAGCACTTGAGTGAGCATGTCACC GTCGAACCGACCTTCTTCTGCGACTTCCCGACCGACGTCTCCCCGCTGACACGACAGCACCGCGATGACCCGCGACTGGC CGAGAAATGGGATCTCATCATCTTCGGCTCCGAGGTGGGTACTGCCTATACGGAACTCGTCGATCCGGTGATCCAACGGG AGCGGTTTACAGCCCAGTCCTTGCTCGCTGCGGGTGGCGATCCGGAGGCGATGGAGCTTGATGAGGACTTCCTGGAGGCT CTCGAGTACGCGATGCCGCCTTCTGGCGGTATGGGCATGGGGCTGGATCGTCTGGTCATGATGCTGACGAATGCGTCAAT TCGCGAGACGATTAGCTTCCCGCTGGTGCGTCCGCGCACCTTGTGA Protein sequence : MNIAALLIVLRLVFSRTTWVAIANNVFSLFIFPVDGFGWAGVVVLLVLSDALSRRKRFAWWVSLVVFGLMWLVAAAFFII VVTEVFIGWPTDTLNDVDLAGYLFNVFSVGWILVALLTHRRDFAAHTVRANLGRAVVVLVGGLLATGFIGWLLVSLTGGV GRPRNRLVHIITRILQGSGAGIAQEPTSPHWVQGVVSFLLAVVLVAALVVILRSQRNIAMMSLSDELRLRRLLDENPADS LGYFALRRDKAVVFSRNGHAAVCYRTEAGVALASGDPVGPVDQWPGAIDAFLEVAHTYGWVPAVVGTSEEGATTWNQAGL RAMRIGDEAIISPATFNLDDPDLKPVRHTVTKLRAMGYTTRVRRHEDINPQELHSLIDLTDKWRQNGDERGFSMALSRLG DPLDGRCVMVEAIYPDDGPRAGQTAGILSFTPWGNDGLSLDVMRRDLDGADNGVTELMVAGLMAAGPEIGIRRVSMNFAV FREAIEEGARVGASPVRRLNRWLVLVASKWFQIEQLYRSNVKYKPSWQTRYLNFTDTSDLAQVGLAMGIAEGQLDIPNWL YPVEPPPQPIYSISGHPEIAEFLAEERAPILPQRRLPEQVRTRMATRERLIESGVEAYPPDCKPDHRLGDVAVELTGQEM TVSGRVDACRDHGGVIFVDLFDWTGACQLVMERDTMGVDSLRDFRHAVSLGDHLVATGTVGASRNGTLSLEMTSWRLAAK SLRPLPSRRSGFNDPEAKVRQRYLDLIVNPSARDQLRARSNAIRAVRETLLSHDYIEVETPILQTIHGGANARPFHTHIN AYDLDLYLRIAPELYLKRLMVGGAGRVFEIGRNFRNEGADATHNPEFTMLEAYQAYGDYVQMRHLTREMILSAARNATGG TVVRGRDRKGVEHEIDLANEWHVITVNEGISRGLGEEVTADTPKETLIGYANKLGIATLPKWSRGDVVLELHEHLSEHVT VEPTFFCDFPTDVSPLTRQHRDDPRLAEKWDLIIFGSEVGTAYTELVDPVIQRERFTAQSLLAAGGDPEAMELDEDFLEA LEYAMPPSGGMGMGLDRLVMMLTNASIRETISFPLVRPRTL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-157 | 46 |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-157 | 46 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-157 | 46 |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 3e-157 | 46 |
