|
Name : kdpB (HMPREF0675_3121) Accession : YP_003580311.1 Strain : Propionibacterium acnes SK137 Genome accession: NC_014039 Putative virulence/resistance : Unknown Product : K+-transporting ATPase, B subunit Function : - COG functional category : P : Inorganic ion transport and metabolism COG ID : COG2216 EC number : 3.6.3.12 Position : 139133 - 141247 bp Length : 2115 bp Strand : + Note : identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01497 DNA sequence : ATGACCGTCATCCCTTCGAATTCGCGTTCCCGCGGTCTCACCGGGACTCAGGCGCGTCAGGCCCTGCCCGGAGCCCTTCG TAAGCTTGATCCGCGTTTTCAGTGGCGCAACCCGGTTATGTTTTTGGTGTGGATTGGCGCAGTCCTGACAACCATCATCG CTGGCCTGGAACTGCTCACTGGTGTCACCGACGGCGGTGTTTCCGTCGGTTTTTCCATGGCCATTGCGGTGTGGCTGTGG CTGACCGTCATCTTCGCCAACCTTGCCGAGTCGATCGCTGAGGGTCGCGGCAAGGCCCAGGCCGAGTCATTGCGCAAGAC CCGCACCGCCACCAGCGCGATTCGCGTCGACGGGTGGGACGAGCGGAACGATCCGTCCGCCGAGCACACCACGACAACCG AGGTCGTCTCCTCGGAGCTCAGGTATGGCGACGTCGTCGTCGTGGCGGCGGGCCAGACGATCCCTGGTGACGGCGACATC GTCTGGGGCATCGCTTCGGTCGACGAATCGGCCATCACCGGTGAGTCAGCCCCCGTGGTACGGGAGTCCGGCGGCGACCG TTCTGCCGTCACCGGTGGTACGACAGTGCTTTCGGACCGTATCGTCGTCAAAATCACCTCGAAGCCCGGGCAAAGTTTCG TCGACCGCATGATCGCCCTGGTTGAGGGTTCCGGACGTCAGAAGACCCCCAACGAGATTGCCCTCAATATCTTGCTGGCG AGCCTCTCGATTGTCTTTGTCCTCGTCACCCTGACCCTCAACCCAATTGCGTCCCTGGCCGCCAGGCCGGTGAGCGTCAC GGTATTGGTGGCGCTGCTGGTCTGCCTCGTCCCGACGACGATCGGTGCTCTGCTGTCGGCCATCGGCATCGCGGGTATGG ACCGCCTGGTGCAGCACAACGTGTTGGCAATGTCCGGACGCGCGGTGGAGGCCGCCGGCGACGTTACGACTCTTCTACTC GACAAGACTGGCACCATCACCTACGGAAACCGTCGTGCCAGCGAATTCATACCGATGCCGGGTATGAGCGACGAAGAGAT TCGCGACGCGGCCGCCCGGTCTTCGCTGGCCGACCCGACTCCCGAGGGCACCTCCATCGTCGACCTGGCCCGCGAGCAGG GCTTCGTCCCCGATGCCTGCGGCGAACAGGGGAAAGTCGTCCCCTTTACCGCTCAGACCAGAATGTCGGGCATCGACCTT CCCGACGGCACCAAAATCCGTAAGGGTGCCGGATCTGCTGTACGCGCCTGGCTGACGGAGTCCCACATCAATATGGACAT CGACACGCTGGCGCACATGGATCGCCGGGTCGACTCGGTGTCCCAGTCCGGTGGTACTCCGCTCGTCGTGGCGGTACGCA CCCCCGACCACTCGGGCAAGGTGCTCGGCGTCGTTCACCTCAAGGACATCGTCAAGGAGGGTCTAACCGACCGGTTTGCT GAGCTGCGTCGAATGGGCATCCGCACTGTCATGGTGACCGGAGACAACCCGCTGACCGCAGCCGCCATTGCCAAGGAGGC TGGCGTGGACGATTTCCTCGCCGAGGCCACCCCGGAGGACAAGCTCGCCTACATCCGCAAGGAGCAGGAGGGTGGCCGGA TGGTCGCGATGACCGGTGACGGCACCAACGATGCCCCGGCTCTGGCCCAGGCGGACGTCGGCGTCGCGATGAACACCGGC ACCTCGGCTGCTAAGGAGGCCGGCAACATGGTGGACCTTGACTCCGACCCGACGAAGCTCATCAGCATTGTCGGAATCGG CAAGCAACTACTCATCACGCGCGGTGCCCTGACGACCTTCTCGATCGCCAACGATATTGCCAAGTATTTTGCGATCATCC CAGCGATCTTCATGGCGACCTACCCGGGTCTGTCGGCCCTCAACATTATGGGTTTGCATTCCCCAGCGTCAGCGGTGCTC TCGGCGATCATCTTTAACGCCATCATCATCGTTATTTTGGTTCCGCTGGCCCTCAAAGGCGTGGCATACAAGCCCGCCGG GGCGTCGAAAATCCTCGCACGGAACCTGCGCATCTACGGGTTGGGCGGTGTTGTTGCGCCGTTCATCGGCATCTGGCTTA TCGACCTGATTATCCGTCTCATTCCCGGCTTCTGA Protein sequence : MTVIPSNSRSRGLTGTQARQALPGALRKLDPRFQWRNPVMFLVWIGAVLTTIIAGLELLTGVTDGGVSVGFSMAIAVWLW LTVIFANLAESIAEGRGKAQAESLRKTRTATSAIRVDGWDERNDPSAEHTTTTEVVSSELRYGDVVVVAAGQTIPGDGDI VWGIASVDESAITGESAPVVRESGGDRSAVTGGTTVLSDRIVVKITSKPGQSFVDRMIALVEGSGRQKTPNEIALNILLA SLSIVFVLVTLTLNPIASLAARPVSVTVLVALLVCLVPTTIGALLSAIGIAGMDRLVQHNVLAMSGRAVEAAGDVTTLLL DKTGTITYGNRRASEFIPMPGMSDEEIRDAAARSSLADPTPEGTSIVDLAREQGFVPDACGEQGKVVPFTAQTRMSGIDL PDGTKIRKGAGSAVRAWLTESHINMDIDTLAHMDRRVDSVSQSGGTPLVVAVRTPDHSGKVLGVVHLKDIVKEGLTDRFA ELRRMGIRTVMVTGDNPLTAAAIAKEAGVDDFLAEATPEDKLAYIRKEQEGGRMVAMTGDGTNDAPALAQADVGVAMNTG TSAAKEAGNMVDLDSDPTKLISIVGIGKQLLITRGALTTFSIANDIAKYFAIIPAIFMATYPGLSALNIMGLHSPASAVL SAIIFNAIIIVILVPLALKGVAYKPAGASKILARNLRIYGLGGVVAPFIGIWLIDLIIRLIPGF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kdpB | NP_814334.1 | potassium-transporting ATPase subunit B | Not tested | Not named | Protein | 9e-151 | 58 |
| ef0088 | AAM75291.1 | EF0088 | Not tested | Not named | Protein | 6e-151 | 58 |
| kdpB | YP_251949.1 | potassium-transporting ATPase subunit B | Not tested | SCCmec | Protein | 2e-139 | 55 |
| kdpB | YP_190029.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-139 | 55 |
| kdpB | BAA82181.1 | potassium-transporting ATPase(B chanin) | Not tested | Type-II SCCmec | Protein | 2e-139 | 55 |
| SAR0071 | YP_039539.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-139 | 55 |
| kdpB(SCCmec) | NP_370597.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-139 | 55 |
| kdpB | NP_373310.1 | potassium-transporting ATPase subunit B | Not tested | Type-II SCCmec | Protein | 3e-139 | 55 |
