Gene Information

Name : kdpE (RCAP_rcc02256)
Accession : YP_003578393.1
Strain : Rhodobacter capsulatus SB 1003
Genome accession: NC_014034
Putative virulence/resistance : Virulence
Product : KDP operon transcriptional regulatory protein KdpE
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2432089 - 2432775 bp
Length : 687 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCCGTTTGCTTGTCGTCGATGACGACGACCAGATCCAGACCATGCTGCGGATCGCGCTGGAAACGGCGGGCTACGA
GATCGTCGCCGCGACGACCGGGCAGGAGGCGATCCGGCTGGCGGCCAGCATCGCGCCCGAGGCGATCCTGCTCGATCTGG
GCCTGCCCGACCGCGACGGCAAGGAAGTGCTCAAAGCCGTGCGGGCCTTCAGCGCGGTGCCGGTGATCGTGCTTTCGGCC
CGCGACCGCGAGGCGGAAAAGGTCGAGGCGCTGGATCTGGGCGCCGATGACTATCTGGAAAAACCCTTCGGCATCAGCGA
GTTGCAGGCCCGTTTGCGCGCCGCCGCCCGCCATGCGACGCGGGCAAAGGGGGAAACGACGCGGCTGGTGCTGGGCGCGC
TGAGTGTCGATCTGGAGAAGCGGCTGGTGCAAAAGGACGGCCAGCCGGTGCGGCTGACGCCAAAGGAATTCGCGCTGCTC
TCGGTTCTGGTGCGCAATCCGGGCCGGGTGGTGACGCATCGGCAGATCCTGACCGCGGTCTGGGGCCCCGCCCATCACGA
CGACACGCAATATCTGCGCGTCTTCATCGGCCAGCTGCGCGCCAAGATCGAACCCGATCCGGCCGCGCCGGTGCTGATCG
TGACCGAACCGGGCGTCGGCTACCGGCTGGCGGAGGGGCCGCTCTAG

Protein sequence : 
MRRLLVVDDDDQIQTMLRIALETAGYEIVAATTGQEAIRLAASIAPEAILLDLGLPDRDGKEVLKAVRAFSAVPVIVLSA
RDREAEKVEALDLGADDYLEKPFGISELQARLRAAARHATRAKGETTRLVLGALSVDLEKRLVQKDGQPVRLTPKEFALL
SVLVRNPGRVVTHRQILTAVWGPAHHDDTQYLRVFIGQLRAKIEPDPAAPVLIVTEPGVGYRLAEGPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0571 NP_814337.1 DNA-binding response regulator Not tested Not named Protein 1e-36 43
ef0091 AAM75294.1 EF0091 Not tested Not named Protein 7e-37 43
kdpE NP_370594.1 transcriptional regulator kdpE Not tested Type-II SCCmec Protein 3e-34 42
kdpE NP_373306.1 hypothetical protein Not tested Type-II SCCmec Protein 3e-34 42
kdeP YP_190033.1 DNA-binding response regulator KdeP Not tested Type-II SCCmec Protein 3e-34 42
SH0031 YP_251946.1 hypothetical protein Not tested SCCmec Protein 2e-34 42
kdpE BAA82188.1 KDP operon transcriptional regulatory protein KdpE Not tested Type-II SCCmec Protein 2e-34 42
kdpE YP_039536.1 response regulator protein Not tested Type-II SCCmec Protein 3e-34 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kdpE YP_003578393.1 KDP operon transcriptional regulatory protein KdpE BAC0638 Protein 4e-23 43
kdpE YP_003578393.1 KDP operon transcriptional regulatory protein KdpE BAC0487 Protein 1e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kdpE YP_003578393.1 KDP operon transcriptional regulatory protein KdpE VFG1390 Protein 8e-30 41