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Name : RCAP_rcc01440 (RCAP_rcc01440) Accession : YP_003577592.1 Strain : Rhodobacter capsulatus SB 1003 Genome accession: NC_014034 Putative virulence/resistance : Virulence Product : ABC transporter ATP-binding/permease Function : - COG functional category : V : Defense mechanisms COG ID : COG1132 EC number : 3.6.3.- Position : 1553797 - 1555590 bp Length : 1794 bp Strand : + Note : - DNA sequence : ATGGCGGTCATCGGCAAGGAACCGGCCGGGCGGCCGGGGGCAAGTTCCTTTGCGACGACGTTCCGGCAACTGGCCGAAAG CGTCGGGCCGGAAGATGCGCCGGGGCTGCGGCGCGCGCTTTTCGGGCTGATCGCGGCGGCGGCGCTGCAGGGGCTCGGGC TGGCGGTGATCGCGCCCCTTTTCACCGCCGCGGCGACGCCGGGCGGGCTTGACCGGGCGCTTTCGTGGTTTGCTGTTCTG CTTTTGCTGATGGGCGCGGCCTCGGCGCTGCGCTGGCGCGCGCAGGGCTTCGATTTCGACGGCCGGATGGTGCGGGCGAC CTGGCGGCTGCGCCGGCGGCTGGGGGCGAAGCTGCGCGAGATCCCGCTGGAACAGCTGCAGGACAAGCGCGCGGGCGAGA TGAACGCGGTCGTGCTGGGCAATGTCGATGAAAACCTGCTTTATGCGCTGACCGTGCTCAATCTGGTCTTTGCCGCGGTC GTCACGCCGTTTTGCGCCGCGCTGGGGCTGATGCTGTTTGACGGGCGGCTGGGGCTTTTGCTGCTGGCGGTGTTTCCGGC GATCGTGCCGCTTTACCGCTGGCGGCGTCCGGCGCTGGGGCGGGGCAAGCGCATCCTCGGTCAGGCGCACCAAGAAGCAA GCGCCGATGTGCTGGAATACACGCAAGGCTTGGCGATCCTGCGCGCGGCGGGGCGGGCCGGGGAAAAGGCCGCCCGGCTG TCGCAGACCTTCCAGAAACTTGAGGCGATTCAGGTCTTTGGCCATCGCAAAGGGGCGAAGCCCAATATCCTTGTGGCCAG CGTGGTCGAGCTGGGGTTGCTCGCCGTGCTGATGACCGGGGTTTTTCTGGTGACGCGCGGCAGTCTTGATCCGGCGGCGC TTGGGGCGGTTTTCGTGATCGTGGTGCGGCTTTCCGAGCCGCTTTCGACCTTCATCCTTTACACCGCGATGCTGGAGGTG ATGGAGGCCGCGCTGGAACGGATCGGCGCGCTTCTGGCGATGGCGCCCCTGCCGCAGCGGGCGCCCGCCCTGATGCCGAC CCGCCATGACATCCGCTTCGAGGCGGTCAGCTTCACCCATGCCCGGGCCGGGGCGCCGACGATCCGCGCCTTCAGCGCCC TTTTGCCCGAACACTCGCTGACCGCGCTGGTCGGGCCCTCGGGCTGCGGCAAGACCACGCTGACGCGGCTTTTGCTGCGC CATTTCGATCCGCAGGAGGGGGCGTTGCAGATTGGCGGCATCGATCTGCGCCAGATCCCGGCAGAGCGTCTCAACGATCT GATTTCGGTGGTGTTTCAGGACGTCTATCTGTTCAATGACACGGTGCTGGCGAATATCCGCATGGGCCGCCCCGACGCGA CCGAGGCCGAGGTGCGGGCGGCGGCGCAGGCGGCGCAATGCCTTGAATTCATCGAGCGGCTGCCGCAGGGCTGGCAGACG CCTTTGGGCGAGATCGGCGGCAGGCTGTCGGGCGGCGAACGGCAGCGCATCTCGATCGCGCGGGCGCTGCTCAAGGATGC GCCGATTGTCGTTCTGGATGAACCGACGGCGGCGCTCGATACCGAAAGCGAGCTGGCGGTGCAGCGCGCGCTGGATGCGC TGGTGGCGCGCAAGACGGTGATCGTGATCGCGCATCGGCTCTCGACGATTGTCGGGGCGGATCAGATCCTGGTGATCGAG GACGGGCGGCTGGTGCAGGCGGGGCGGCATGCCGATCTTTTGGCCGCGGGCGGGCGCTATGCGCGGATGTGGGCGGCGCA GGGGGCGGTGAAACGCTGGTCGGTCGGGCGCTGA Protein sequence : MAVIGKEPAGRPGASSFATTFRQLAESVGPEDAPGLRRALFGLIAAAALQGLGLAVIAPLFTAAATPGGLDRALSWFAVL LLLMGAASALRWRAQGFDFDGRMVRATWRLRRRLGAKLREIPLEQLQDKRAGEMNAVVLGNVDENLLYALTVLNLVFAAV VTPFCAALGLMLFDGRLGLLLLAVFPAIVPLYRWRRPALGRGKRILGQAHQEASADVLEYTQGLAILRAAGRAGEKAARL SQTFQKLEAIQVFGHRKGAKPNILVASVVELGLLAVLMTGVFLVTRGSLDPAALGAVFVIVVRLSEPLSTFILYTAMLEV MEAALERIGALLAMAPLPQRAPALMPTRHDIRFEAVSFTHARAGAPTIRAFSALLPEHSLTALVGPSGCGKTTLTRLLLR HFDPQEGALQIGGIDLRQIPAERLNDLISVVFQDVYLFNDTVLANIRMGRPDATEAEVRAAAQAAQCLEFIERLPQGWQT PLGEIGGRLSGGERQRISIARALLKDAPIVVLDEPTAALDTESELAVQRALDALVARKTVIVIAHRLSTIVGADQILVIE DGRLVQAGRHADLLAAGGRYARMWAAQGAVKRWSVGR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| irp7 | CAB46572.1 | inner membrane ABC-transporter, Irp7 | Virulence | HPI | Protein | 3e-115 | 54 |
| irp7 | YP_001006812.1 | inner membrane ABC-transporter YbtQ | Not tested | HPI | Protein | 4e-115 | 54 |
| ybtQ | YP_070127.1 | ABC transporter permease | Virulence | HPI | Protein | 3e-115 | 54 |
| ybtQ | CAA21387.1 | - | Virulence | HPI | Protein | 3e-115 | 54 |
| irp7 | YP_002346905.1 | ABC transporter permease | Not tested | HPI | Protein | 3e-115 | 54 |
| ybtQ | NP_669703.1 | permease and ATP-binding protein of yersiniabactin-iron ABC transporter | Virulence | HPI | Protein | 3e-115 | 54 |
| ybtQ | NP_993010.1 | ABC transporter permease | Virulence | HPI | Protein | 3e-115 | 54 |
| APECO1_1055 | YP_853072.1 | ABC transporter | Not tested | PAI IV APEC-O1 | Protein | 1e-114 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| RCAP_rcc01440 | YP_003577592.1 | ABC transporter ATP-binding/permease | BAC0433 | Protein | 1e-115 | 54 |
