Gene Information

Name : RCAP_rcc01439 (RCAP_rcc01439)
Accession : YP_003577591.1
Strain : Rhodobacter capsulatus SB 1003
Genome accession: NC_014034
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding/permease
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1132
EC number : 3.6.3.-
Position : 1551983 - 1553797 bp
Length : 1815 bp
Strand : +
Note : -

DNA sequence : 
ATGGCGGTTTCGGAACAGGCGGGCACAGAGGCACCGGGGGCGGGGCGCAGGCCGCCGTCGCCCTGGCGCATCCTGAACCC
CGTGCGGGGGCAGATCCGGCTGGCGATGGCGATTTCGGCGGGCTCGGCGCTTTCAGCGCTTGGGGTGATGGTGTCGCTGA
CGCTGGTGATCCGCGCGCTGCTGGACCGGCCGGAGATCATGCCCTGGGGCCCGCTTGGCGCGGCGGCGCTTTGCACGGTT
GCCGCCTATGCCGCCCGGCTTGGCGCCTTCAACCAGGCGCATTACGCGGCCTTCCGGCTGGAGCGGATCTTGCGCATCGG
TCTGGCGAACCGGCTGGCGCGGGTGTCGCTGGGCTATGTCGAGGCGCAGGGCGCGGGCGCGCTGGCCAAGGTCATCCATG
ACGACGTGAAGGCGCTGCATGTCTTTGTCGCCGACAGCACGCCGCTTTATGCCCGCGCCTATGTCACGCCGGTCGTGACC
TTCGCGCTGCTTTGGCTGTTCGACTGGCGGCTGGCGCTGGTGGCGCTGGCGGTGCTGGCGCTTGGCTGGGGCATCCTGCG
CGGGGCGCAGCGGCGGCGGCGCGACATGGTGCGGGCCTATAATGCGGCGCGCGAAAAGGTCAGCGCGGCGGTTGTGGAAT
ATGTGCAGGCGATGCCCGTGGTGCGCAATTTCGACAGCGGCCAAAGCAGTTTCGGCCGCTATCAGGCGGCGCTCGACGGC
TATCTGGCGGTGATGCTGGACTGGTACCGCGCCGCGGGTTTTCCGGCGCGGTTCTCCTGGCTGATGCTGGGCCCGATGCC
GACGCTGACGCTGGTCCTTGGCGCGGGGCTTTGGTTCAGCGCGATGGGCGATCTGTCGGTGCCGCGCTGGCTGGGGGTGC
TTCTGGCCTGCACCGGCATGGCCGAGGCGATGATGCCGATGATGATGCTGCGCCACATGATCGAAAAGGTCGGGCTGAGC
GTGGCGCGGATCGAGGAGGTGATGGCCGCCCCCGATCTGGACGAGGCCGGGGCGATGCCGCCCGGGCCGCTCGCCTTCGA
CCCTGCGGCGCCTGCGCTGCGCTTTGACCGGGTGCGGTTTTCCTATGCGCCCGACCTGCCCCCGGCGCTTGACGATGTCA
GTTTCGAGGTCGCGCGCGGCAGTGTCACCGCGCTGGTCGGCCCCTCGGGCGCGGGCAAGACCACGGTGGCGCGTCTGGTG
CCGCGGTTCTGGGATGTCACCGCGGGCAAGATCGAGATCGGCGGCCATGACATCCGCAAGATCGGCGCCGGGCGGCTGAT
GCAACAGGTCGCCTTCGTGTTTCAGGAAAGCTTCCTTTTTGCCGATACCATCGCGGCGAATATCCGCATCGGCCGCCCCG
AGGCCACCGAGGCCGAGGTGATCGCGGCGGCACGGGCGGCGCAGGCTCATGACTTCATCACCGCGCTGCCGCAGGGCTAC
GAGACCCGGGCGGGGGAACGCGGCGTGTTCCTCTCGGGCGGGCAGCGCCAGCGCATCGCCATTGCCCGGGCGCTGCTGCA
AGATCGTCCGGTGCTGGTGCTGGACGAGGCGACGGCCTTTGCCGATCCGGAAAACGAGGCCGAGCTGATTGCGGCGCTCT
CCGAGCTGATGCGCGGGCGCACGGTGATCATGGTGGCGCATCGGCTGGCGACGATCCGCGATGCCGATCAGATCCTTGTC
TTCGAGCGCGGCCGGATCGTCGAGCGCGGCCGTCACGCGGCGCTGGTGGGGCAGGGCGGGCTTTATGCAAGGCTTTGGCA
GAATTACGAAACGGCGCAAAACTGGTCGCTTGGCGCGGCCCGGGAGGGGATCTGA

Protein sequence : 
MAVSEQAGTEAPGAGRRPPSPWRILNPVRGQIRLAMAISAGSALSALGVMVSLTLVIRALLDRPEIMPWGPLGAAALCTV
AAYAARLGAFNQAHYAAFRLERILRIGLANRLARVSLGYVEAQGAGALAKVIHDDVKALHVFVADSTPLYARAYVTPVVT
FALLWLFDWRLALVALAVLALGWGILRGAQRRRRDMVRAYNAAREKVSAAVVEYVQAMPVVRNFDSGQSSFGRYQAALDG
YLAVMLDWYRAAGFPARFSWLMLGPMPTLTLVLGAGLWFSAMGDLSVPRWLGVLLACTGMAEAMMPMMMLRHMIEKVGLS
VARIEEVMAAPDLDEAGAMPPGPLAFDPAAPALRFDRVRFSYAPDLPPALDDVSFEVARGSVTALVGPSGAGKTTVARLV
PRFWDVTAGKIEIGGHDIRKIGAGRLMQQVAFVFQESFLFADTIAANIRIGRPEATEAEVIAAARAAQAHDFITALPQGY
ETRAGERGVFLSGGQRQRIAIARALLQDRPVLVLDEATAFADPENEAELIAALSELMRGRTVIMVAHRLATIRDADQILV
FERGRIVERGRHAALVGQGGLYARLWQNYETAQNWSLGAAREGI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ybtP YP_070126.1 lipoprotein inner membrane ABC-transporter Virulence HPI Protein 2e-117 54
irp6 YP_002346904.1 lipoprotein inner membrane ABC transporter Not tested HPI Protein 1e-117 54
ybtP CAA21388.1 - Virulence HPI Protein 1e-117 54
ybtP YP_853073.1 inner membrane ABC-transporter Not tested PAI IV APEC-O1 Protein 1e-117 54
ybtP NP_669704.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 1e-117 54
ybtP NP_993009.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 1e-117 54
irp6 YP_001006813.1 lipoprotein inner membrane ABC-transporter Not tested HPI Protein 2e-117 54
irp6 CAB46573.1 lipoprotein inner membrane ABC-transporter, Irp6 Virulence HPI Protein 5e-116 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RCAP_rcc01439 YP_003577591.1 ABC transporter ATP-binding/permease BAC0432 Protein 7e-118 54