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Name : clpC (PRU_0812) Accession : YP_003574166.1 Strain : Prevotella ruminicola 23 Genome accession: NC_014033 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 945874 - 948408 bp Length : 2535 bp Strand : - Note : identified by similarity to SP:P37571; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 DNA sequence : ATGACGACACAATTTTCGCCAAAACTATCAGAAATACTGGCTTTCTCGCGTGAAGAGGCAGCTCGACTGGCTAGCCGATC GGTGGGTCCCGAACACCTACTGCTTGGCATTCTGCGCAGTAACGAGGGTCCGGTTATCGACCTGTTTAACAGGCTGAACC TGAATATGCAGGCGGTAAAGACTGAACTGGAAATGCGCGTAAGGGAGGACGAAATCGGTCAGCCTATACACACTACCGAC CTGGTGCTGAACGAGAAGGCCAGCAACGTACTGCGACTGGCTGTACTGGAGGCACGCATACAGAGAGCCAATAAGATAGA CGAGCAACACCTGCTGCTGGCCATACTGCACGACTTGGCTAACAACGGGGCAAAACAAGTTTTAGAAATGAACGATGTGA CATACGACGACGCTGCAGCCATACTGTTTGCGCCGAAGAACACAAACGTAAGTAATAACGTGAGCAACGGCATAGGACTG CCCGACGAGGAGGAAGAGGAGTTTGAGATGAATGGCGACAAGGGCATTCCGGTGAGCAAGATTAATAACACCGCCCAGAA GAAGCCCGCCTCGAAGACACCTGTACTCGACAGCTTTGGTACCGACCTGACAAAGGCCGCTGCTGATGGTAAGCTGGATC CCTGTGTGGGTCGCGAGCGCGAGATACAGCGTATTGTAGAGATTCTGGGTCGCCGCAAGAAGAACAACCCCATACTGATT GGCGAGCCTGGTGTAGGTAAGAGCGCCATTGTAGAGGGACTGGCCCAGATGATTGAGGCCCACCACTGCAGTCCAATGCT GTTTGGAAAGCGCATTTTTACGCTGGATATGACAGGCGTTGTGGCAGGCACCAAGTATCGCGGACAGTTTGAGGAGCGCC TGAAAGCCCTGATGAAGGAGCTGGAGGCTAACCCCGACGTGATTGTATTCATCGACGAGATACACACCATCATCGGTGCA GGTTCTACCCCTGGCAGTATGGATGCTGCCAACATTATGAAACCTGCCTTGGCACGCGGCACCATACAGTGCATTGGTGC TACCACGCTGGATGAGTATCGCGAGAGCATTGAGAAGGATGGTGCCTTGGAGCGTCGATTCCAGAAGGTGCAGGTAGAGG CTACCACCAACGAGGAGACGCTGCAGATTCTGCGTAACATCAAGGATCGCTACGAGCAGCACCACCACGTGACATATACC GACGCGGCACTCGAGGCCTGTGTCAAATTGACAGACCGATACATTACCGACCGCTTTATGCCAGATAAGGCCATCGACGC GCTGGACGAGACTGGTTCGAAGGTACACTTAGGCAACGCACAGATTCCACCCGAGATTATTGAGAAGGAGAAGGAGCTGG CCGATGCCCGCGAAAAGAAGCAGAAGGCGGTAAAGAACCAGAACTACGAGCTGGCAGCCGGTTATCGCGACCGCGAGACA ACCCTTACCAAGGAGTTGAAGGAGCTGAACGACCGCTGGAGCAACGGCGAGGGCGAAGAGCGACTGGTGGTAGATGCCGA CCAGGTGGCCGAGGTGGTTTCGATGATGACGGGTGTGCCCGTACAGCGCATGGCCGAACAGGAGGGTGTACGCCTGAAGG GTATGGCCGTAGAGCTGAAGAACGCCGTGATAGCCCAGGATGCCGCTATCGACAAGATGGTAAAGGCCATCCAGCGCAAC CGTGTAGGACTGAAGGAGCCCAACCACCCTATCGGCGTGTTTATGTTCTTAGGTCCTACAGGTGTGGGAAAAACCTACCT GGCCAAGAAGCTGGCAGAGTTTATGTTTGGCAGCAGCGAGGCGCTGATTCGTATCGACATGAGTGAATATACCGAGAGCT TTAACACCTCGCGACTGATTGGTGCACCTCCGGGATACGTAGGTTACGGCGAGGGCGGACAGCTGACAGAGCGCGTGCGC CGTCACCCCTACTCGATTGTTCTGTTGGACGAGATTGAGAAAGCTCACAGCAACGTGTTCAACCTGTTGCTGCAGGTGCT TGACGAGGGACGCATGACAGACGGTAACGGACGACTGGTGGATTTCCGCAACACGGTGATTATCATGACATCGAATGCAG GTACTCGCCAGCTGAAGGACTTTGGCCGTGGCGTAGGTTTCGGTGCATCGGCACAGACGGGACTGATGAAGAGCGACAAG GACAAGCAGTATGCACGCGACATTGTACAGAAGGCACTGTCGAAGCAGTTCTCGCCTGAGTTCCTGAACCGACTGGATGA GATTATCACCTTCGACCAGCTGGATCTGGATGCCATCAAGCGCATTATCGATGTAGAGCTGAAGAGCCTGTACAACCGTA TTGAGCAGATAGGCTATCACATCGACCTGAGCGACGAGGCCAAGGAGTTTGTGGCCACCAAAGGTTACGATGTGCAGTTT GGTGCCCGTCCGCTAAAGCGCGCTATACAGAACTATCTGGAGGATGGCATTAGCGACCTGATAGTGAATGGCGACCTTGA ACCGGGAGCCACCATCCATATCACACTTAAAGAAAATGAGTTAGCGTTTAGCTAA Protein sequence : MTTQFSPKLSEILAFSREEAARLASRSVGPEHLLLGILRSNEGPVIDLFNRLNLNMQAVKTELEMRVREDEIGQPIHTTD LVLNEKASNVLRLAVLEARIQRANKIDEQHLLLAILHDLANNGAKQVLEMNDVTYDDAAAILFAPKNTNVSNNVSNGIGL PDEEEEEFEMNGDKGIPVSKINNTAQKKPASKTPVLDSFGTDLTKAAADGKLDPCVGREREIQRIVEILGRRKKNNPILI GEPGVGKSAIVEGLAQMIEAHHCSPMLFGKRIFTLDMTGVVAGTKYRGQFEERLKALMKELEANPDVIVFIDEIHTIIGA GSTPGSMDAANIMKPALARGTIQCIGATTLDEYRESIEKDGALERRFQKVQVEATTNEETLQILRNIKDRYEQHHHVTYT DAALEACVKLTDRYITDRFMPDKAIDALDETGSKVHLGNAQIPPEIIEKEKELADAREKKQKAVKNQNYELAAGYRDRET TLTKELKELNDRWSNGEGEERLVVDADQVAEVVSMMTGVPVQRMAEQEGVRLKGMAVELKNAVIAQDAAIDKMVKAIQRN RVGLKEPNHPIGVFMFLGPTGVGKTYLAKKLAEFMFGSSEALIRIDMSEYTESFNTSRLIGAPPGYVGYGEGGQLTERVR RHPYSIVLLDEIEKAHSNVFNLLLQVLDEGRMTDGNGRLVDFRNTVIIMTSNAGTRQLKDFGRGVGFGASAQTGLMKSDK DKQYARDIVQKALSKQFSPEFLNRLDEIITFDQLDLDAIKRIIDVELKSLYNRIEQIGYHIDLSDEAKEFVATKGYDVQF GARPLKRAIQNYLEDGISDLIVNGDLEPGATIHITLKENELAFS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-163 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_003574166.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0080 | Protein | 8e-150 | 51 |
| clpC | YP_003574166.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 47 |
