Gene Information

Name : PRU_1979 (PRU_1979)
Accession : YP_003575255.1
Strain : Prevotella ruminicola 23
Genome accession: NC_014033
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2385856 - 2386530 bp
Length : 675 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence : 
ATGATTAAGTTAGAAAACATTCAGAAGGTGTTCCGTACCGAAGAGGTGGAGACCGTTGCATTGGGCGGTGTATCGCTCGA
AGTAAAGAAAGGCGAGTTCGTGGCCATCATGGGTCCATCGGGCTGTGGTAAATCAACCTTACTTAACATTCTGGGTTTGC
TCGATAATCCTACCAGTGGTCAGTATCTGCTGGATGGTCAGGATGTGGGCTCGCTCAAGGAGAGTCAGCGTACCAAGGTT
CGCAAGGGCCAGATTGGTTTCGTGTTCCAGAGCTTTAACCTGATTGATGAATTGAATGTTGAAGAGAATGTAGAGTTGCC
TCTTACTTATCTGGGTGTGCCCAAGAAGGAACGCAAGGCAAGGGTAGAGGAGGTACTGCGCCGCATGGCCATCAGTCATC
GTGCCCACCACTTCCCCCAGCAGTTGTCAGGAGGTCAGCAACAGCGTGTGGCCATCGCCCGTGCCGTAGTGATGAATCCT
AAGATTATCCTCGCCGATGAGCCCACTGGTAACCTCGACTCAAAGAACGGACTTGAGGTGATGCAGCTTCTTACCCAGCT
GAATCAGGAGGGTACCACCGTGGTAATGGTAACCCACTCGGAGCGCGATGCCGGTTATGCCCAGCGCACCATCAACCTGC
TCGACGGTCAGGTAGTGCCTGAGGTTACGCTGTAA

Protein sequence : 
MIKLENIQKVFRTEEVETVALGGVSLEVKKGEFVAIMGPSGCGKSTLLNILGLLDNPTSGQYLLDGQDVGSLKESQRTKV
RKGQIGFVFQSFNLIDELNVEENVELPLTYLGVPKKERKARVEEVLRRMAISHRAHHFPQQLSGGQQQRVAIARAVVMNP
KIILADEPTGNLDSKNGLEVMQLLTQLNQEGTTVVMVTHSERDAGYAQRTINLLDGQVVPEVTL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-29 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-30 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-30 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-30 43
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 3e-33 42
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 1e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PRU_1979 YP_003575255.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 3e-54 55
PRU_1979 YP_003575255.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 9e-43 52
PRU_1979 YP_003575255.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 1e-35 50
PRU_1979 YP_003575255.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 4e-32 46
PRU_1979 YP_003575255.1 ABC transporter ATP-binding protein NC_012469.1.7686946. Protein 2e-30 43
PRU_1979 YP_003575255.1 ABC transporter ATP-binding protein NC_012469.1.7685735. Protein 8e-34 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PRU_1979 YP_003575255.1 ABC transporter ATP-binding protein VFG0869 Protein 1e-23 42
PRU_1979 YP_003575255.1 ABC transporter ATP-binding protein VFG2059 Protein 2e-17 41