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Name : lysS (PRU_1691) Accession : YP_003574986.1 Strain : Prevotella ruminicola 23 Genome accession: NC_014033 Putative virulence/resistance : Virulence Product : lysine--tRNA ligase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 2044489 - 2046216 bp Length : 1728 bp Strand : + Note : identified by similarity to SP:P13030; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGAACATTTTAGAGTTAAGCGAACAAGAAATCGGAAGGCGTCAGAGCCTTCAGGAACTGCGCTCGATGGGCATCGATCC CTATCCTGCAGCCGAGTTCCCAACAAATGCATTCAGCACAGAAATTAAGGAAAGTTTCAAGGACGATGAGGATCGTGAGG TCGTTATCGCAGGTCGTATGATGAGCCGTCGTGTCATGGGTAAGGCATCTTTTGCCGAGCTTCAGGACTCAAAGGGCCGT ATCCAGGTGTACATCACTCGCGATGATATCTGCCCAGGCGAGAACAAGGACCTATATAATAATGTATTCAAGCGTTTGCT CGATATTGGCGATTTCATCGGTGTTAAGGGTAAGGTTTTCCGCACCCAGACTGGTGAGATTTCTGTACATGCCTCAGAGC TTACACTGCTTTCAAAGAGCCTTAAGCCACTGCCTATCGTGAAGTACAAGGATGGTGTGGCCTACGATAAGTTTGATGAT CCCGAGTTGCGTTATCGCCAGCGTTATGTCGACCTGGTAGTTAACGAGGGCGTAAAGGATACCTTCCTGAAGCGTGCAAC TATCATTCGCACCATGCGTAGCATTCTCGACAATGCTGGTTATACCGAGGTTGACACACCTATCCTGCAGAGCATCGCAG GTGGTGCATCAGCCCGTCCATTCATCACCCACTTCAATGCCCTGAATCAGGACATGTACATGCGTATTGCCACCGAGCTT TACCTGAAGCGCCTGATTGTAGGTGGTTTCGAGGGTGTTTACGAGATGGGTAAGAACTTCCGTAACGAGGGTATGGACAA GACCCACAACCCTGAGTTCACCTGCATGGAGCTCTACGTGAGCTATAAGGATCTGCTGTGGGGTATGACCTTCACCGAGA AGATGCTCGAGGAGATCTGTACAGCTGTAAACGGCAAGCCCGAGGTTGAGATTGATGGTAAGGTTATCTCATTCAAGGCC CCATTCCGTCGCCTGCCTATCCTCGATGCGATCAAGGAGAAGACAGGTTTCGATTGCGATGGCAAGACCGAGGACGAGAT TCGTGCATTCTGCCTCTCTAAGGGCATGGATGTAGATGAGACCATGGGTAAGGGTAAGCTGATCGATGAGCTCTTTGGTG AGTTCTGCGAGAGCACCTTCATCCAGCCTACCTTCATCACCGATTATCCTGTTGAGATGTCACCTCTTACCAAGATGCAT CGTTCTAAGCCCGGTCTCACCGAGCGTTTCGAGCTGATGGTTAATGGTAAGGAGCTGGCCAATGCTTATTCTGAACTCAA CGATCCTATCGATCAGGAGGAGCGCTTTATCGAGCAGATGAAGTTAGCTGATAAGGGCGACGACGAGGCTATGATCATCG ACCACGACTTCCTGCGTGCCCTCCAGTACGGTATGCCTCCTACATTCGGTATTGGTATCGGTATCGACCGTCTGGTGATG CTGATGACTGGTAAGTTTGCTATTGGCGAGGTAATGCTGTTCCCACAGATGAAGCCTGAGAAGAAGATTCCTCAGTCATC TGTAGCAGAGTGGGCCGAGATTGGTGTACCCGAGGATATCGTTCCAGTACTCCGCAAGGCTGGTTTCAACCTGATCACCA ACATTAAGGACGAGAAGCCCCAGGGGCTGCAGCAGAAGATTGGTGAGATCTTCAAGAAGTACAAGCTCGAACTCCAGAAG CCTTCAGTTGATGAAGTAGCCGCCTGGATCGAAAAGGCCAACGTTTAA Protein sequence : MNILELSEQEIGRRQSLQELRSMGIDPYPAAEFPTNAFSTEIKESFKDDEDREVVIAGRMMSRRVMGKASFAELQDSKGR IQVYITRDDICPGENKDLYNNVFKRLLDIGDFIGVKGKVFRTQTGEISVHASELTLLSKSLKPLPIVKYKDGVAYDKFDD PELRYRQRYVDLVVNEGVKDTFLKRATIIRTMRSILDNAGYTEVDTPILQSIAGGASARPFITHFNALNQDMYMRIATEL YLKRLIVGGFEGVYEMGKNFRNEGMDKTHNPEFTCMELYVSYKDLLWGMTFTEKMLEEICTAVNGKPEVEIDGKVISFKA PFRRLPILDAIKEKTGFDCDGKTEDEIRAFCLSKGMDVDETMGKGKLIDELFGEFCESTFIQPTFITDYPVEMSPLTKMH RSKPGLTERFELMVNGKELANAYSELNDPIDQEERFIEQMKLADKGDDEAMIIDHDFLRALQYGMPPTFGIGIGIDRLVM LMTGKFAIGEVMLFPQMKPEKKIPQSSVAEWAEIGVPEDIVPVLRKAGFNLITNIKDEKPQGLQQKIGEIFKKYKLELQK PSVDEVAAWIEKANV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-91 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003574986.1 | lysine--tRNA ligase | VFG1668 | Protein | 6e-92 | 45 |
