Gene Information

Name : ompR (SRM_03045)
Accession : YP_003572919.1
Strain : Salinibacter ruber M8
Genome accession: NC_014032
Putative virulence/resistance : Virulence
Product : response regulator receiver, transcriptional regulatory protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3563989 - 3564732 bp
Length : 744 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTGACGCCCCCCATCTTTTGCTTGTCGAGGACGAGCCCGACGTCGCCTCGTTCGTGCAGCAGGGGCTCAACGAAGA
GGGGTACGAGGTGAGCTGGGTCGAGGCCGGCCGGCGTGGGCTCGACTACGCCCGGCAGGGCGGCATCGACCTCGTGCTGC
TGGACATCCGTCTCCCCGATCTGTCCGGGCTGGAGGTGTGCGAGCGCCTGCGCCTGCACCGCCCCGAGCTGCCGATCCTG
ATGCTCACCGCCCTCGACGCCGTGGAGGACCGGGTGCGGGGCCTCCGGGCCGGGGCGGACGACTACCTCCCCAAGCCGTT
TGCCTTCGACGAGCTTCTGGCGCGCATCGAGGCCCTCCTGCGCCGCGTGGACCGGCCCTCGGAGCCGGGGCGGGTGGAGG
ACGGGCCGCTCGTGCTCGACCCGGCGGCCCGCACCTGCACCTTCGACGGCGAAGAAGTCGACCTTACGCCCACCGAGTTC
GACCTGTTGGCCTTCCTCATGGCCCGCCACGGCCAGGCGTTGAGCCGCGACACGATCCACCAGGAGGTGTGGGGGCATGA
TTTCGATCGCGGGACGAACCTGATCGACGTGTACGTGAACTACGTCCGCCGCAAGCTCGACGAGGTTGGCTGCGAGGCGC
CCATTGAAACCGTACGGGGCATCGGCTACCGGTACACCGCCTGCTCAGAGGCAGACGCCTCCGCCGACGACCGCTCCTCC
CCCACCGATTCCGCGAGCTCGTGA

Protein sequence : 
MSDAPHLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLEVCERLRLHRPELPIL
MLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDRPSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEF
DLLAFLMARHGQALSRDTIHQEVWGHDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYRYTACSEADASADDRSS
PTDSASS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-28 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-27 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ompR YP_003572919.1 response regulator receiver, transcriptional regulatory protein BAC0125 Protein 1e-31 45
ompR YP_003572919.1 response regulator receiver, transcriptional regulatory protein BAC0308 Protein 1e-29 44
ompR YP_003572919.1 response regulator receiver, transcriptional regulatory protein BAC0083 Protein 1e-31 44
ompR YP_003572919.1 response regulator receiver, transcriptional regulatory protein BAC0111 Protein 2e-33 44
ompR YP_003572919.1 response regulator receiver, transcriptional regulatory protein HE999704.1.gene1528. Protein 8e-34 43
ompR YP_003572919.1 response regulator receiver, transcriptional regulatory protein BAC0197 Protein 1e-31 43
ompR YP_003572919.1 response regulator receiver, transcriptional regulatory protein BAC0638 Protein 5e-26 43
ompR YP_003572919.1 response regulator receiver, transcriptional regulatory protein BAC0347 Protein 2e-28 41
ompR YP_003572919.1 response regulator receiver, transcriptional regulatory protein CP001918.1.gene5135. Protein 1e-15 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ompR YP_003572919.1 response regulator receiver, transcriptional regulatory protein VFG1390 Protein 1e-32 45
ompR YP_003572919.1 response regulator receiver, transcriptional regulatory protein VFG0596 Protein 3e-28 44
ompR YP_003572919.1 response regulator receiver, transcriptional regulatory protein VFG1389 Protein 4e-28 41