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Name : hofB (YPZ3_3023) Accession : YP_003569194.1 Strain : Yersinia pestis Z176003 Genome accession: NC_014029 Putative virulence/resistance : Virulence Product : putative type II secretion system protein Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 3880662 - 3882125 bp Length : 1464 bp Strand : + Note : - DNA sequence : GTGGCACTCACTCTTGATGGTAAAAGCCTTTCGATAGCTTCAGCCCAGACCGTTGATGAAGCGTTATTGACCGCGTTGCG TTTCACATGTGGCCGTCAAGTCAGAGTGGAATATTGGCCCGAAGCCAAGATTGAACAATCATTGTATTTGGGGAGCCCGA CGAAAAATAACCTAAACAGTAGTATTAACAACGGGCTAAATAGCGCGTTGTTATCCCAAAAGGGAGGTGATCCGTCGCGA GTAAAACCGCACAATCAGCAGCAACAGACAATAGATGATACTGTGTTTGATAATGAGAGTGACACACCCGTCATTCAATT CATAACCCAGACGCTAAGTCTAGCCATTCAAAAACGCGCTTCAGATATCCATTTTGAGCCTTATCAACACCACTATCGTG TTCGTTTAAGAATTGATGGTGTGTTGCATGAATTCACCCCACCCGAGGCCGAATGGGCAGCTCGGATTAGCAGTTGCCTG AAGGTCATGGCGAAATTAAATATTGCTGAACGGCGATTACCACAAGATGGTCAACTAACCTTACCCTTTGGTGATTCACA CTATTCAATGCGGATAGCGACTCTCCCTACGCAATATGGTGAAAAAGTGGTATTGCGTATTCTTCAAATACAACAGCAAA CCACGTTAGAAAAGCTGGGGATGACGGATGCGGCACTGAAACAATTAACACAGGCATTATCAGCACCACAAGGGCTGATT CTGGTCACCGGCCCTACCGGTAGTGGCAAAACCATTACGTTATATTGCAGTTTAGCGCGGCTGAATCAGACACAAAGAAA CATCTGTAGCGTCGAAGATCCTATTGAGATCCCCGTCAATGGCATTAACCAAACCCAGGTAAACAGCAAGATCGGTCTGG ATTTCTCTCGAATACTACGAGCCATCCTACGACAGGACCCTGATGTCATTATGGTTGGTGAAATTCGTGATAATGAAACC GCCAGTATCGCAGTTAACGCGGCCCAGACCGGGCATTTGGTCCTATCGACGCTGCACACTAACTCAACAGCAGAAACGCT GATACGCATGGCACAAATGGGAATAGAACGCCATTTAATCGCCTCAAGTCTAAAACTCGTCATTGCTCAACGCTTGGTGC GCCGCCTATGTTTACATTGCCGCCAGGCTGCATCTCACCCCTTTATTCCACCAGCTCACATAAGGTCTGGTCCGATCCAA CACTATCTAGCTGTAGGTTGTGAGCATTGTTGTACGGGTTATTATGGCCGAACGGGTATTTATGAAATGCTGAGTGTAAC GCCGCAGATTCAGCAAGCCATACTCAATAATGCCAGCCCTGTAAAACTGGTACAAATTGCCCAGAAGCAAGAACAAACAG CCTTACTCTGCTCAGGTTTAGCTTTAATCGAAAAAGGCATCACTACCCTTAGTGAAATTAATCGTGTTGTGGGCTTCGTA GCAGAAACAGAGGTCACCTCTTGA Protein sequence : MALTLDGKSLSIASAQTVDEALLTALRFTCGRQVRVEYWPEAKIEQSLYLGSPTKNNLNSSINNGLNSALLSQKGGDPSR VKPHNQQQQTIDDTVFDNESDTPVIQFITQTLSLAIQKRASDIHFEPYQHHYRVRLRIDGVLHEFTPPEAEWAARISSCL KVMAKLNIAERRLPQDGQLTLPFGDSHYSMRIATLPTQYGEKVVLRILQIQQQTTLEKLGMTDAALKQLTQALSAPQGLI LVTGPTGSGKTITLYCSLARLNQTQRNICSVEDPIEIPVNGINQTQVNSKIGLDFSRILRAILRQDPDVIMVGEIRDNET ASIAVNAAQTGHLVLSTLHTNSTAETLIRMAQMGIERHLIASSLKLVIAQRLVRRLCLHCRQAASHPFIPPAHIRSGPIQ HYLAVGCEHCCTGYYGRTGIYEMLSVTPQIQQAILNNASPVKLVQIAQKQEQTALLCSGLALIEKGITTLSEINRVVGFV AETEVTS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-72 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-72 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofB | YP_003569194.1 | putative type II secretion system protein | VFG1876 | Protein | 6e-72 | 48 |
| hofB | YP_003569194.1 | putative type II secretion system protein | VFG0112 | Protein | 3e-84 | 48 |
| hofB | YP_003569194.1 | putative type II secretion system protein | VFG2426 | Protein | 6e-75 | 46 |
| hofB | YP_003569194.1 | putative type II secretion system protein | VFG2048 | Protein | 3e-74 | 46 |
| hofB | YP_003569194.1 | putative type II secretion system protein | VFG0182 | Protein | 2e-70 | 46 |
| hofB | YP_003569194.1 | putative type II secretion system protein | VFG0233 | Protein | 2e-76 | 46 |
