Gene Information

Name : lcrO (YPZ3_pCD0042)
Accession : YP_003560547.1
Strain :
Genome accession: NC_014017
Putative virulence/resistance : Virulence
Product : type III secretion apparatus component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 40175 - 40522 bp
Length : 348 bp
Strand : +
Note : -

DNA sequence : 
ATGCCGAACATAGAAATAGCTCAGGCCGATGAGGTGATCATAACCACGCTGGAGGAATTAGGGCCGGCAGAGCCAACAAC
TGACCAAATAATGCGCTTTGATGCGGCAATGTCAGAAGATACGCAGGGACTGGGCCATTCACTCCTCAAGGAGGTTAGTG
ATATTCAGAAGTCTTTTAAGACGGTTAAAAGTGACTTACACACTAAGCTGGCTGTTTCAGTTGATAATCCCAACGACCTG
ATGCTAATGCAATGGTCACTTATCCGTATAACAATCCAAGAAGAACTTATCGCCAAGACTGCCGGGCGAATGAGCCAAAA
TGTTGAAACCTTGTCGAAGGGGGGGTGA

Protein sequence : 
MPNIEIAQADEVIITTLEELGPAEPTTDQIMRFDAAMSEDTQGLGHSLLKEVSDIQKSFKTVKSDLHTKLAVSVDNPNDL
MLMQWSLIRITIQEELIAKTAGRMSQNVETLSKGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscI AAO18028.1 LscI Virulence TTSS locus Protein 1e-24 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lcrO YP_003560547.1 type III secretion apparatus component VFG0408 Protein 3e-49 100
lcrO YP_003560547.1 type III secretion apparatus component VFG0217 Protein 2e-21 49