Gene Information

Name : yscQ (YPZ3_pCD0030)
Accession : YP_003560535.1
Strain :
Genome accession: NC_014017
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1886
EC number : -
Position : 29378 - 30295 bp
Length : 918 bp
Strand : +
Note : -

DNA sequence : 
TTGTTAACCTTGCCACAGGCCAAATTAAGTGAACTGTCGCTACGTCAACGGCTCAGCCATTATCAACAAAACTACTTGTG
GGAAGAGGGAAAACTCGAACTTACCGTCTCTGAGCCTCCTTCGTCTTTGAACTGTATATTACAGTTACAATGGAAGGGAA
CGCACTTCACGCTCTACTGTTTTGGCAATGATCTGGCTAACTGGTTAACCGCCGACTTACTAGGGGCTCCATTCTTTACT
CTGCCGAAAGAGTTGCAACTTGCGCTGTTGGAACGCCAGACAGTTTTCCTGCCGAAACTGGTCTGTAATGATATAGCGAC
AGCGTCTCTTTCTGTCACGCAACCTCTGTTGAGTTTGCGGCTGTCCCGAGATAATGCGCATATCTCCTTCTGGCTAACCT
CAGCTGAGGCTCTGTTCGCTCTGTTACCCGCACGACCCAATTCTGAGCGCATACCTTTGCCTATCCTTATTTCTTTGCGT
TGGCATAAAGTATACCTGACTCTAGATGAGGTTGATTCCCTTCGATTAGGTGATGTGTTGTTGGCCCCTGAGGGGAGTGG
GCCTAATTCGCCAGTACTCGCCTATGTTGGTGAGAACCCTTGGGGCTACTTTCAATTACAATCAAATAAATTGGAGTTTA
TCGGTATGAGTCATGAATCTGACGAACTTAACCCCGAACCATTGACCGATTTGAACCAACTTCCGGTTCAAGTTAGCTTT
GAAGTGGGGCGGCAAATCTTAGATTGGCACACACTCACTAGCCTGGAGCCGGGTTCTCTTATTGATCTTACAACACCTGT
TGATGGTGAAGTGCGCTTGCTGGCTAACGGCCGGTTGCTTGGACATGGTCGATTGGTCGAGATCCAAGGGCGCCTCGGGG
TTCGAATTGAACGCCTGACAGAGGTTACGATTTCATGA

Protein sequence : 
MLTLPQAKLSELSLRQRLSHYQQNYLWEEGKLELTVSEPPSSLNCILQLQWKGTHFTLYCFGNDLANWLTADLLGAPFFT
LPKELQLALLERQTVFLPKLVCNDIATASLSVTQPLLSLRLSRDNAHISFWLTSAEALFALLPARPNSERIPLPILISLR
WHKVYLTLDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGMSHESDELNPEPLTDLNQLPVQVSF
EVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERLTEVTIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscQ AAO18041.1 LscQ Virulence TTSS locus Protein 1e-60 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscQ YP_003560535.1 type III secretion protein VFG0393 Protein 4e-138 99
yscQ YP_003560535.1 type III secretion protein VFG0189 Protein 7e-45 41