Gene Information

Name : yopB (YPZ3_pCD0018)
Accession : YP_003560523.1
Strain :
Genome accession: NC_014017
Putative virulence/resistance : Virulence
Product : secreted effector protein
Function : -
COG functional category : S : Function unknown
COG ID : COG5613
EC number : -
Position : 18275 - 19309 bp
Length : 1035 bp
Strand : -
Note : -

DNA sequence : 
GTGGTTGCCAGCCAAGTTACTGAAGGACAACAGCAAGAAGTCACTAAATTATTGGAGTCGGTCACCCGCGGCGCGGCAGG
ATCTCAACTGATATCAAATTATGTTTCAGTGCTAACGAAGTTTACGCTTGCTTCACCTGATACATTTGAGATTGAGTTAG
GTAAGCTAGTTTCTAATTTAGAAGAAGTACGCAAAGACATAAAAATCGCTGATATTCAGCGTCTTCATGAACAAAACATG
AAGAAAATTGAAGAGAATCAAGAGAAAATCAAAGAAACAGAAGAGAATGCCAAGCAAGTCAAGAAATCCGGCATCGCATC
AAAGATTTTTGGCTGGCTCAGCGCCATAGCCTCAGTGATTGTCGGTGCCATCATGGTGGCCTCAGGGGTAGGAGCCGTTG
CCGGTGCAATGATGGTTGCCTCAGGCGTAATTGGGATGGCGAATATGGCAGTGAAACAAGCGGCGGAAGATGGCCTGATA
TCCCAAGAGGCAATGAAAATATTAGGGCCGATACTCACTGCGATTGAAGTCGCATTGACTGTAGTTTCAACCGTAATGAC
CTTTGGCGGTTCGGCACTAAAATGCCTGGCTAATATTGGCGCAAAACTCGGTGCTAACACCGCAAGTCTTGTGGCTAAAG
GAGCCGAGTTTTCGGCCAAAGTTGCCCAAATTTCGACAGGCATATCAAACACTGTCGGGAGTGCAGTGACTAAATTAGGG
GGCAGTTTTGCTGGTTTAACAATGAGCCATGCAATCCGTACAGGATCACAGGCAACACAAGTCGCCGTTGGTGTGGGCAG
CGGAATAACTCAGACCATCAATAATAAAAAGCAAGCTGATTTACAACATAATAACGCTGATTTGGCCTTGAACAAGGCAG
ACATGGCAGCGTTACAAAGTATTATTGACCGACTCAAAGAAGAGTTATCCCATTTGTCAGAGTCACATCAACAAGTGATG
GAACTGATTTTCCAGATGATTAATGCAAAAGGTGACATGCTGCATAATTTGGCCGGCAGACCCCATACTGTTTAA

Protein sequence : 
MVASQVTEGQQQEVTKLLESVTRGAAGSQLISNYVSVLTKFTLASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNM
KKIEENQEKIKETEENAKQVKKSGIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQAAEDGLI
SQEAMKILGPILTAIEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLG
GSFAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVM
ELIFQMINAKGDMLHNLAGRPHTV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lopB AAO18055.1 LopB Virulence TTSS locus Protein 5e-39 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yopB YP_003560523.1 secreted effector protein VFG0379 Protein 3e-129 99
yopB YP_003560523.1 secreted effector protein VFG0203 Protein 9e-43 43