Gene Information

Name : SVI_4239 (SVI_4239)
Accession : YP_003558988.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4841475 - 4842152 bp
Length : 678 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAATTTTACTCGTTGAAGATGATACGACCACAATCGAATATGTGGTCAAAGGATTTGTTGAGCAGGGGCACAACAT
AGAAACGGCCAGCGATGGTCATCAAGGTTTACTGCTCGCGACTAGCATGAAATATGATCTGGTGATCTTGGACCGTATGT
TGCCTCAACTCGATGGACTTAAATTACTGGCCGCCTTAAGGGCGACGGGTAGCCAGACTCCTGTGCTAATTCTGTCTGCA
CTGGGTCATGTGGATGAGAGAGTCAAAGGGTTACGTGCCGGTGGCGATGATTACATGACTAAACCCTTTGCCTTCTCAGA
ACTATTGGTACGAGCCGAAAAGTTAATGTTGAGAGGCTTAGCTAAACCAACTGAGACTGAACTATCGGTTGGCAACCTGC
TGATGGAGTTGCTAACCCGTAAGGTGACGTTGGACGGTAACGAGCTTATGTTACAGCCCAAGGAGTTCCAGCTACTCAAG
TATTTGATGGAGCATCCGAATCAGGTGATCAGCCGTACCTTGCTGTTTGAGGCTGTATGGGATTACCACTTCGATCCTCG
CACCAATGTTATCGATGTTCATATTGCTAAGCTCAGACGTAAGTTTGAAGAACTTGGCTTCGGCGAATTGATTGAGACAG
TACGAGGTGCTGGTTATCGCCTCCGTGAAGGGCATTAA

Protein sequence : 
MKILLVEDDTTTIEYVVKGFVEQGHNIETASDGHQGLLLATSMKYDLVILDRMLPQLDGLKLLAALRATGSQTPVLILSA
LGHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMLRGLAKPTETELSVGNLLMELLTRKVTLDGNELMLQPKEFQLLK
YLMEHPNQVISRTLLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRLREGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-40 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-39 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_4239 YP_003558988.1 DNA-binding response regulator BAC0347 Protein 4e-45 47
SVI_4239 YP_003558988.1 DNA-binding response regulator BAC0111 Protein 1e-46 46
SVI_4239 YP_003558988.1 DNA-binding response regulator BAC0083 Protein 4e-40 44
SVI_4239 YP_003558988.1 DNA-binding response regulator BAC0197 Protein 8e-38 44
SVI_4239 YP_003558988.1 DNA-binding response regulator BAC0125 Protein 5e-40 43
SVI_4239 YP_003558988.1 DNA-binding response regulator BAC0638 Protein 3e-37 43
SVI_4239 YP_003558988.1 DNA-binding response regulator BAC0308 Protein 1e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_4239 YP_003558988.1 DNA-binding response regulator VFG0596 Protein 2e-40 46
SVI_4239 YP_003558988.1 DNA-binding response regulator VFG1389 Protein 7e-35 43